public void test_Species_parent_create() { Model m = new Model(2,4); Species s = m.createSpecies(); ListOf lo = m.getListOfSpecies(); assertTrue( lo == s.getParentSBMLObject() ); assertTrue( lo == m.getSpecies(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_Species_parent_add() { Species ia = new Species(2,4); ia.setId("s"); ia.setCompartment("c"); Model m = new Model(2,4); m.addSpecies(ia); ia = null; ListOf lo = m.getListOfSpecies(); assertTrue( lo == m.getSpecies(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_Species_ancestor_add() { Species ia = new Species(2,4); Model m = new Model(2,4); ia.setId("s"); ia.setCompartment("c"); m.addSpecies(ia); ia = null; ListOf lo = m.getListOfSpecies(); Species obj = m.getSpecies(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_Species_ancestor_create() { Model m = new Model(2,4); Species s = m.createSpecies(); ListOf lo = m.getListOfSpecies(); assertTrue( s.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( s.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( s.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( s.getAncestorOfType(libsbml.SBML_EVENT) == null ); Species obj = m.getSpecies(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_ReadSBML_metaid_ListOf() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions metaid='lofd'/>" + "<listOfUnitDefinitions metaid='loud'/>" + "<listOfCompartments metaid='loc'/>" + "<listOfSpecies metaid='los'/>" + "<listOfParameters metaid='lop'/>" + "<listOfRules metaid='lor'/>" + "<listOfReactions metaid='lorx'/>" + "<listOfEvents metaid='loe'/>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getListOfFunctionDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lofd" == sb.getMetaId() )); sb = M.getListOfUnitDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loud" == sb.getMetaId() )); sb = M.getListOfCompartments(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loc" == sb.getMetaId() )); sb = M.getListOfSpecies(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "los" == sb.getMetaId() )); sb = M.getListOfParameters(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lop" == sb.getMetaId() )); sb = M.getListOfRules(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lor" == sb.getMetaId() )); sb = M.getListOfReactions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lorx" == sb.getMetaId() )); sb = M.getListOfEvents(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loe" == sb.getMetaId() )); }