getListOfSpecies() public method

public getListOfSpecies ( ) : ListOfSpecies
return ListOfSpecies
 public void test_Species_parent_create()
 {
     Model m = new Model(2,4);
       Species s = m.createSpecies();
       ListOf lo = m.getListOfSpecies();
       assertTrue( lo == s.getParentSBMLObject() );
       assertTrue( lo == m.getSpecies(0).getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }
 public void test_Species_parent_add()
 {
     Species ia = new Species(2,4);
       ia.setId("s");
       ia.setCompartment("c");
       Model m = new Model(2,4);
       m.addSpecies(ia);
       ia = null;
       ListOf lo = m.getListOfSpecies();
       assertTrue( lo == m.getSpecies(0).getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }
Ejemplo n.º 3
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 public void test_Species_ancestor_add()
 {
     Species ia = new Species(2,4);
       Model m = new Model(2,4);
       ia.setId("s");
       ia.setCompartment("c");
       m.addSpecies(ia);
       ia = null;
       ListOf lo = m.getListOfSpecies();
       Species obj = m.getSpecies(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
 }
Ejemplo n.º 4
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 public void test_Species_ancestor_create()
 {
     Model m = new Model(2,4);
       Species s = m.createSpecies();
       ListOf lo = m.getListOfSpecies();
       assertTrue( s.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( s.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( s.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( s.getAncestorOfType(libsbml.SBML_EVENT) == null );
       Species obj = m.getSpecies(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
 }
Ejemplo n.º 5
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 public void test_ReadSBML_metaid_ListOf()
 {
     SBase sb;
       string s = wrapSBML_L2v1("<listOfFunctionDefinitions metaid='lofd'/>" +
     "<listOfUnitDefinitions     metaid='loud'/>" +
     "<listOfCompartments        metaid='loc'/>" +
     "<listOfSpecies             metaid='los'/>" +
     "<listOfParameters          metaid='lop'/>" +
     "<listOfRules               metaid='lor'/>" +
     "<listOfReactions           metaid='lorx'/>" +
     "<listOfEvents              metaid='loe'/>");
       D = libsbml.readSBMLFromString(s);
       M = D.getModel();
       assertTrue( M != null );
       sb = M.getListOfFunctionDefinitions();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "lofd" == sb.getMetaId() ));
       sb = M.getListOfUnitDefinitions();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "loud" == sb.getMetaId() ));
       sb = M.getListOfCompartments();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "loc" == sb.getMetaId() ));
       sb = M.getListOfSpecies();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "los" == sb.getMetaId() ));
       sb = M.getListOfParameters();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "lop" == sb.getMetaId() ));
       sb = M.getListOfRules();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "lor" == sb.getMetaId() ));
       sb = M.getListOfReactions();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "lorx" == sb.getMetaId() ));
       sb = M.getListOfEvents();
       assertEquals( true, sb.isSetMetaId() );
       assertTrue((  "loe" == sb.getMetaId() ));
 }