public void ProcessData(IMatrixData mdata, Parameters param, ref IMatrixData[] supplTables,
ref IDocumentData[] documents, ProcessInfo processInfo)
{
int[] catColInds = param.GetParam <int[]>("Categorical rows for renaming").Value;
ParameterWithSubParams <int> parmInd = param.GetParamWithSubParams <int>("Rename type");
int renameType = parmInd.Value;
string[] newNames = new string[mdata.ColumnCount];
Dictionary <string, int> repeatNames = new Dictionary <string, int>();
bool change = false;
for (int i = 0; i < mdata.ColumnCount; i++)
{
string newName = "";
foreach (int catColInd in catColInds)
{
if (mdata.GetCategoryRowEntryAt(catColInd, i)[0] != "NA")
{
change = true;
}
newName = newName + " " + mdata.GetCategoryRowEntryAt(catColInd, i)[0];
}
if (change)
{
change = false;
newNames[i] = newName;
}
else
{
newNames[i] = mdata.ColumnNames[i];
}
}
if (renameType == 0)
{
IsobaricLabeling(parmInd, mdata, newNames);
}
else if (renameType == 1)
{
for (int i = 0; i < mdata.ColumnCount; i++)
{
if (newNames[i] != mdata.ColumnNames[i])
{
mdata.ColumnNames[i] = mdata.ColumnNames[i] + " " + newNames[i];
}
}
}
else
{
CheckRepeat(newNames);
for (int i = 0; i < mdata.ColumnCount; i++)
{
mdata.ColumnNames[i] = newNames[i];
}
}
}
public void IsobaricLabeling(ParameterWithSubParams <int> parmInd, IMatrixData mdata,
string[] newNames)
{
int expInd = parmInd.GetSubParameters().GetParam <int>("Experiment row").Value;
int channelInd = parmInd.GetSubParameters().GetParam <int>("Channel row").Value;
bool detect = false;
for (int i = 0; i < mdata.ColumnCount; i++)
{
string[] expCols = mdata.GetCategoryRowEntryAt(expInd, i)[0].Split(' ');
string[] mainCols = mdata.ColumnNames[i].Split(' ');
if (mainCols.Length > expCols.Length)
{
string[] checkExpName = new string[expCols.Length];
Array.Copy(mainCols, (mainCols.Length - expCols.Length), checkExpName, 0, expCols.Length);
if ((String.Join(" ", expCols) == String.Join(" ", checkExpName)) &&
(mainCols[mainCols.Length - expCols.Length - 1] == mdata.GetCategoryRowEntryAt(channelInd, i)[0]))
{
string mainString = "";
for (int j = 0; j < (mainCols.Length - expCols.Length - 1); j++)
{
mainString = mainString + " " + mainCols[j];
}
detect = true;
newNames[i] = mainString.Trim() + " " + newNames[i];
}
}
}
if (detect)
{
CheckRepeat(newNames);
for (int i = 0; i < mdata.ColumnCount; i++)
{
mdata.ColumnNames[i] = newNames[i];
}
}
else
{
for (int i = 0; i < mdata.ColumnCount; i++)
{
if (newNames[i] != mdata.ColumnNames[i])
{
mdata.ColumnNames[i] = mdata.ColumnNames[i] + " " + newNames[i];
}
}
}
}
public string GetRowName(int ind, int nameColumnIndex, bool cutNames)
{
if (ind < 0)
{
return("");
}
if (nameColumnIndex < 0)
{
return("");
}
if (ind >= mdata.ColumnNames.Count)
{
return(mdata.NumericColumnNames[ind - mdata.ColumnNames.Count]);
}
if (nameColumnIndex == 0)
{
return(mdata.ColumnNames[ind]);
}
int indw = nameColumnIndex - 1;
if (indw < mdata.CategoryRowCount)
{
if (ind >= 0 && ind < mdata.ColumnCount)
{
string[] w = mdata.GetCategoryRowEntryAt(indw, ind);
if (cutNames)
{
return(w.Length > 0 ? w[0] : "");
}
return(StringUtils.Concat(";", w));
}
}
int indi = indw - mdata.CategoryRowCount;
if (indi < mdata.NumericRowCount && indi >= 0)
{
double[] q = mdata.NumericRows[indi];
if (ind >= 0 && ind < q.Length)
{
return("" + q[ind]);
}
}
return("");
}
public static int[] GetIndicesOfCol(IMatrixData data, string categoryName, HashSet <string> values)
{
int index = GetIndexOfCol(data, categoryName);
List <int> result = new List <int>();
for (int i = 0; i < data.ColumnCount; i++)
{
string[] s = data.GetCategoryRowEntryAt(index, i);
foreach (string s1 in s)
{
if (values.Contains(s1))
{
result.Add(i);
break;
}
}
}
return(result.ToArray());
}
public static int[] GetIndicesOfCol(IMatrixData data, string categoryName, HashSet<string> values)
{
int index = GetIndexOfCol(data, categoryName);
List<int> result = new List<int>();
for (int i = 0; i < data.ColumnCount; i++){
string[] s = data.GetCategoryRowEntryAt(index, i);
foreach (string s1 in s){
if (values.Contains(s1)){
result.Add(i);
break;
}
}
}
return result.ToArray();
}
