public static void SetupMDataForInput(IMatrixData data, int[] columnIndx, int[] nameInd, double baseVal)
{
data.StringColumns = ArrayUtils.SubList(data.StringColumns, nameInd);
data.StringColumnNames = ArrayUtils.SubList(data.StringColumnNames, nameInd);
data.StringColumnDescriptions = ArrayUtils.SubList(data.StringColumnDescriptions, nameInd);
List <int> toConvert = new List <int>();
List <int> numList = new List <int>();
int expressInd = 0;
foreach (int i in columnIndx)
{
if (i < data.ColumnCount)
{
toConvert.Add(i);
numList.Add(data.NumericColumnCount + expressInd);
expressInd += 1;
}
else
{
numList.Add(i - data.ColumnCount);
}
}
int[] numArr = numList.ToArray();
//convert expression to numeric
data.ExtractColumns(toConvert.ToArray());
ExpressionToNumeric(Enumerable.Range(0, data.ColumnCount).ToArray(), data);
data.NumericColumns = ArrayUtils.SubList(data.NumericColumns, numArr);
//change data form depending whether needed
if (baseVal > 0)
{
foreach (int col in numArr)
{
for (int i = 0; i < data.RowCount; i++)
{
data.NumericColumns[col][i] = Math.Pow(baseVal, data.NumericColumns[col][i]);
}
}
}
data.NumericColumnNames = ArrayUtils.SubList(data.NumericColumnNames, numArr);
data.NumericColumnDescriptions = ArrayUtils.SubList(data.NumericColumnDescriptions, numArr);
NumericToString(Enumerable.Range(0, numArr.Length).ToArray(), data);
for (int j = 0; j < data.StringColumnCount; j++)
{
for (int i = 0; i < data.RowCount; i++)
{
data.StringColumns[j][i] = string.Equals(data.StringColumns[j][i], "NaN") ? "NA" : data.StringColumns[j][i];
}
}
//clearing irrelevant info
data.ClearMultiNumericColumns();
data.ClearMultiNumericRows();
data.ClearCategoryColumns();
data.ClearCategoryRows();
}
private static void SetAnnotationRows(IMatrixData result, IMatrixData mdata1, IMatrixData mdata2)
{
result.CategoryRowNames.Clear();
result.CategoryRowDescriptions.Clear();
result.ClearCategoryRows();
result.NumericRowNames.Clear();
result.NumericRowDescriptions.Clear();
result.NumericRows.Clear();
string[] allCatNames = ArrayUtils.Concat(mdata1.CategoryRowNames, mdata2.CategoryRowNames);
allCatNames = ArrayUtils.UniqueValues(allCatNames);
result.CategoryRowNames = new List<string>();
string[] allCatDescriptions = new string[allCatNames.Length];
for (int i = 0; i < allCatNames.Length; i++){
allCatDescriptions[i] = GetDescription(allCatNames[i], mdata1.CategoryRowNames, mdata2.CategoryRowNames,
mdata1.CategoryRowDescriptions, mdata2.CategoryRowDescriptions);
}
result.CategoryRowDescriptions = new List<string>();
for (int index = 0; index < allCatNames.Length; index++){
string t = allCatNames[index];
string[][] categoryRow = new string[mdata1.ExpressionColumnCount + mdata2.ExpressionColumnCount][];
for (int j = 0; j < categoryRow.Length; j++){
categoryRow[j] = new string[0];
}
int ind1 = mdata1.CategoryRowNames.IndexOf(t);
if (ind1 >= 0){
string[][] c1 = mdata1.GetCategoryRowAt(ind1);
for (int j = 0; j < c1.Length; j++){
categoryRow[j] = c1[j];
}
}
int ind2 = mdata2.CategoryRowNames.IndexOf(t);
if (ind2 >= 0){
string[][] c2 = mdata2.GetCategoryRowAt(ind2);
for (int j = 0; j < c2.Length; j++){
categoryRow[mdata1.ExpressionColumnCount + j] = c2[j];
}
}
result.AddCategoryRow(allCatNames[index], allCatDescriptions[index], categoryRow);
}
string[] allNumNames = ArrayUtils.Concat(mdata1.NumericRowNames, mdata2.NumericRowNames);
allNumNames = ArrayUtils.UniqueValues(allNumNames);
result.NumericRowNames = new List<string>(allNumNames);
string[] allNumDescriptions = new string[allNumNames.Length];
for (int i = 0; i < allNumNames.Length; i++){
allNumDescriptions[i] = GetDescription(allNumNames[i], mdata1.NumericRowNames, mdata2.NumericRowNames,
mdata1.NumericRowDescriptions, mdata2.NumericRowDescriptions);
}
result.NumericRowDescriptions = new List<string>(allNumDescriptions);
foreach (string t in allNumNames){
double[] numericRow = new double[mdata1.ExpressionColumnCount + mdata2.ExpressionColumnCount];
for (int j = 0; j < numericRow.Length; j++){
numericRow[j] = double.NaN;
}
int ind1 = mdata1.NumericRowNames.IndexOf(t);
if (ind1 >= 0){
double[] c1 = mdata1.NumericRows[ind1];
for (int j = 0; j < c1.Length; j++){
numericRow[j] = c1[j];
}
}
int ind2 = mdata2.NumericRowNames.IndexOf(t);
if (ind2 >= 0){
double[] c2 = mdata2.NumericRows[ind2];
for (int j = 0; j < c2.Length; j++){
numericRow[mdata1.ExpressionColumnCount + j] = c2[j];
}
}
result.NumericRows.Add(numericRow);
}
}