/// <summary> /// Imports the SBML Modifiers to MoBi Modifiers. /// </summary> private void CreateModifiers(Reaction sbmlReaction, IReactionBuilder reactionBuilder, string reactionCompartment, Model model) { for (long i = 0; i < sbmlReaction.getNumModifiers(); i++) { var modifier = sbmlReaction.getModifier(i); if (ModifierInDifferentCompartment(reactionCompartment, modifier, model)) { continue; } var modifierMolecule = _sbmlInformation.GetMoleculeBySBMLId(modifier.getSpecies()); if (modifierMolecule != null) { reactionBuilder.AddModifier(modifierMolecule.Name); } } }
public void test_SpeciesReference_Modifier_parent_create() { Reaction r = new Reaction(2,4); ModifierSpeciesReference sr = r.createModifier(); ListOf lo = r.getListOfModifiers(); assertTrue( lo == sr.getParentSBMLObject() ); assertTrue( lo == r.getModifier(0).getParentSBMLObject() ); assertTrue( r == lo.getParentSBMLObject() ); }
public void test_SpeciesReference_Modifier_parent_add() { ModifierSpeciesReference sr = new ModifierSpeciesReference(2,4); sr.setSpecies("s"); Reaction r = new Reaction(2,4); r.addModifier(sr); sr = null; ListOf lo = r.getListOfModifiers(); assertTrue( lo == r.getModifier(0).getParentSBMLObject() ); assertTrue( r == lo.getParentSBMLObject() ); }
public void test_SpeciesReference_Modifier_ancestor_create() { Reaction r = new Reaction(2,4); ModifierSpeciesReference sr = r.createModifier(); ListOf lo = r.getListOfModifiers(); assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); ModifierSpeciesReference obj = r.getModifier(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); }
public void test_SpeciesReference_Modifier_ancestor_add() { ModifierSpeciesReference sr = new ModifierSpeciesReference(2,4); sr.setSpecies("s"); Reaction r = new Reaction(2,4); r.addModifier(sr); sr = null; ListOf lo = r.getListOfModifiers(); ModifierSpeciesReference obj = r.getModifier(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); }