|
public getModifier ( long n ) : |
||
| n | long | |
| return | ||
/// <summary>
/// Imports the SBML Modifiers to MoBi Modifiers.
/// </summary>
private void CreateModifiers(Reaction sbmlReaction, IReactionBuilder reactionBuilder, string reactionCompartment, Model model)
{
for (long i = 0; i < sbmlReaction.getNumModifiers(); i++)
{
var modifier = sbmlReaction.getModifier(i);
if (ModifierInDifferentCompartment(reactionCompartment, modifier, model))
{
continue;
}
var modifierMolecule = _sbmlInformation.GetMoleculeBySBMLId(modifier.getSpecies());
if (modifierMolecule != null)
{
reactionBuilder.AddModifier(modifierMolecule.Name);
}
}
}
public void test_SpeciesReference_Modifier_parent_create()
{
Reaction r = new Reaction(2,4);
ModifierSpeciesReference sr = r.createModifier();
ListOf lo = r.getListOfModifiers();
assertTrue( lo == sr.getParentSBMLObject() );
assertTrue( lo == r.getModifier(0).getParentSBMLObject() );
assertTrue( r == lo.getParentSBMLObject() );
}
public void test_SpeciesReference_Modifier_parent_add()
{
ModifierSpeciesReference sr = new ModifierSpeciesReference(2,4);
sr.setSpecies("s");
Reaction r = new Reaction(2,4);
r.addModifier(sr);
sr = null;
ListOf lo = r.getListOfModifiers();
assertTrue( lo == r.getModifier(0).getParentSBMLObject() );
assertTrue( r == lo.getParentSBMLObject() );
}
public void test_SpeciesReference_Modifier_ancestor_create()
{
Reaction r = new Reaction(2,4);
ModifierSpeciesReference sr = r.createModifier();
ListOf lo = r.getListOfModifiers();
assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r );
assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
ModifierSpeciesReference obj = r.getModifier(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}
public void test_SpeciesReference_Modifier_ancestor_add()
{
ModifierSpeciesReference sr = new ModifierSpeciesReference(2,4);
sr.setSpecies("s");
Reaction r = new Reaction(2,4);
r.addModifier(sr);
sr = null;
ListOf lo = r.getListOfModifiers();
ModifierSpeciesReference obj = r.getModifier(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}