protected override void Import(Model model) { if (model == null) return; if (_sbmlProject == null) return; for (long i = 0; i < model.getNumUnitDefinitions(); i++) { ConvertUnit(model.getUnitDefinition(i)); } }
public void test_UnitDefinition_parent_create() { Model m = new Model(2,4); UnitDefinition ud = m.createUnitDefinition(); ListOf lo = m.getListOfUnitDefinitions(); assertTrue( lo == m.getUnitDefinition(0).getParentSBMLObject() ); assertTrue( lo == ud.getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_UnitDefinition_parent_add() { UnitDefinition ia = new UnitDefinition(2,4); Model m = new Model(2,4); ia.setId("u"); ia.createUnit(); m.addUnitDefinition(ia); ia = null; ListOf lo = m.getListOfUnitDefinitions(); assertTrue( lo == m.getUnitDefinition(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_UnitDefinition_ancestor_create() { Model m = new Model(2,4); UnitDefinition ud = m.createUnitDefinition(); ListOf lo = m.getListOfUnitDefinitions(); assertTrue( ud.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( ud.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( ud.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( ud.getAncestorOfType(libsbml.SBML_EVENT) == null ); UnitDefinition obj = m.getUnitDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_UnitDefinition_ancestor_add() { UnitDefinition ia = new UnitDefinition(2,4); Model m = new Model(2,4); ia.setId("u"); ia.createUnit(); m.addUnitDefinition(ia); ia = null; ListOf lo = m.getListOfUnitDefinitions(); UnitDefinition obj = m.getUnitDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_ReadSBML_metaid_Unit() { SBase sb; UnitDefinition ud; string s = wrapSBML_L2v1("<listOfUnitDefinitions>" + " <unitDefinition metaid='ud'>" + " <listOfUnits metaid='lou'>" + " <unit metaid='u'/>" + " </listOfUnits>" + " </unitDefinition>" + "</listOfUnitDefinitions>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); ud = M.getUnitDefinition(0); sb = ud; assertEquals( true, sb.isSetMetaId() ); assertTrue(( "ud" == sb.getMetaId() )); sb = ud.getListOfUnits(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lou" == sb.getMetaId() )); sb = ud.getUnit(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "u" == sb.getMetaId() )); }
public void test_ReadSBML_metaid() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" + " <functionDefinition metaid='fd'/>" + "</listOfFunctionDefinitions>" + "<listOfUnitDefinitions>" + " <unitDefinition metaid='ud'/>" + "</listOfUnitDefinitions>" + "<listOfCompartments>" + " <compartment metaid='c'/>" + "</listOfCompartments>" + "<listOfSpecies>" + " <species metaid='s'/>" + "</listOfSpecies>" + "<listOfParameters>" + " <parameter metaid='p'/>" + "</listOfParameters>" + "<listOfRules>" + " <rateRule metaid='rr'/>" + "</listOfRules>" + "<listOfReactions>" + " <reaction metaid='rx'/>" + "</listOfReactions>" + "<listOfEvents>" + " <event metaid='e'/>" + "</listOfEvents>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getFunctionDefinition(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "fd" == sb.getMetaId() )); sb = M.getUnitDefinition(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "ud" == sb.getMetaId() )); sb = M.getCompartment(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "c" == sb.getMetaId() )); sb = M.getSpecies(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "s" == sb.getMetaId() )); sb = M.getParameter(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "p" == sb.getMetaId() )); sb = M.getRule(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "rr" == sb.getMetaId() )); sb = M.getReaction(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "rx" == sb.getMetaId() )); sb = M.getEvent(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "e" == sb.getMetaId() )); }
public void test_ReadSBML_Unit_L2() { Unit u; UnitDefinition ud; string s = wrapSBML_L2v1("<listOfUnitDefinitions>" + " <unitDefinition id='Fahrenheit'>" + " <listOfUnits>" + " <unit kind='Celsius' multiplier='1.8' offset='32'/>" + " </listOfUnits>" + " </unitDefinition>" + "</listOfUnitDefinitions>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M.getNumUnitDefinitions() == 1 ); ud = M.getUnitDefinition(0); assertEquals( true, ud.isSetId() ); assertTrue(( "Fahrenheit" == ud.getId() )); assertTrue( ud.getNumUnits() == 1 ); u = ud.getUnit(0); assertTrue( u.getKind() == libsbml.UNIT_KIND_CELSIUS ); assertTrue( u.getExponent() == 1 ); assertTrue( u.getScale() == 0 ); assertTrue( u.getMultiplier() == 1.8 ); assertTrue( u.getOffset() == 32 ); }
public void test_ReadSBML_Unit_defaults_L1_L2() { Unit u; UnitDefinition ud; string s = wrapSBML_L1v2("<listOfUnitDefinitions>" + " <unitDefinition name='bogomips'>" + " <listOfUnits> <unit kind='second'/> </listOfUnits>" + " </unitDefinition>" + "</listOfUnitDefinitions>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M.getNumUnitDefinitions() == 1 ); ud = M.getUnitDefinition(0); assertTrue(( "bogomips" == ud.getId() )); assertTrue( ud.getNumUnits() == 1 ); u = ud.getUnit(0); assertTrue( u.getKind() == libsbml.UNIT_KIND_SECOND ); assertTrue( u.getExponent() == 1 ); assertTrue( u.getScale() == 0 ); assertTrue( u.getMultiplier() == 1.0 ); assertTrue( u.getOffset() == 0.0 ); }
public void test_ReadSBML_UnitDefinition_L2() { UnitDefinition ud; string s = wrapSBML_L2v1("<listOfUnitDefinitions>" + " <unitDefinition id='mmls' name='mmol/ls'/>" + "</listOfUnitDefinitions>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M.getNumUnitDefinitions() == 1 ); ud = M.getUnitDefinition(0); assertEquals( true, ud.isSetId() ); assertEquals( true, ud.isSetName() ); assertTrue(( "mmls" == ud.getId() )); assertTrue(( "mmol/ls" == ud.getName() )); }
public void test_ReadSBML_UnitDefinition() { UnitDefinition ud; string s = wrapSBML_L1v2("<listOfUnitDefinitions>" + " <unitDefinition name='mmls'/>" + "</listOfUnitDefinitions>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M.getNumUnitDefinitions() == 1 ); ud = M.getUnitDefinition(0); assertTrue(( "mmls" == ud.getId() )); }
public void test_ReadSBML_Unit() { Unit u; UnitDefinition ud; string s = wrapSBML_L1v2("<listOfUnitDefinitions>" + " <unitDefinition name='substance'>" + " <listOfUnits> <unit kind='mole' scale='-3'/> </listOfUnits>" + " </unitDefinition>" + "</listOfUnitDefinitions>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M.getNumUnitDefinitions() == 1 ); ud = M.getUnitDefinition(0); assertTrue(( "substance" == ud.getId() )); assertTrue( ud.getNumUnits() == 1 ); u = ud.getUnit(0); assertTrue( u.getKind() == libsbml.UNIT_KIND_MOLE ); assertTrue( u.getExponent() == 1 ); assertTrue( u.getScale() == -3 ); }