public void test_ListOf_append() { Model m = new Model(2,4); m.createCompartment(); ListOf loc = m.getListOfCompartments(); assertTrue( loc.size() == 1 ); SBase c = new Compartment(2,4); int i = loc.append(c); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( loc.size() == 2 ); SBase sp = new Species(2,4); i = loc.append(sp); assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ); assertTrue( loc.size() == 2 ); m = null; sp = null; }
public void test_Compartment_parent_add() { Compartment c = new Compartment(2,4); c.setId("c"); Model m = new Model(2,4); m.addCompartment(c); c = null; ListOf lo = m.getListOfCompartments(); assertTrue( lo == m.getCompartment(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_Compartment_parent_create() { Model m = new Model(2,4); Compartment c = m.createCompartment(); ListOf lo = m.getListOfCompartments(); assertTrue( lo == m.getCompartment(0).getParentSBMLObject() ); assertTrue( lo == c.getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_Compartment_ancestor_create() { Model m = new Model(2,4); Compartment c = m.createCompartment(); ListOf lo = m.getListOfCompartments(); assertTrue( c.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( c.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( c.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( c.getAncestorOfType(libsbml.SBML_EVENT) == null ); Compartment obj = m.getCompartment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_Compartment_ancestor_add() { Compartment c = new Compartment(2,4); c.setId("C"); Model m = new Model(2,4); m.addCompartment(c); c = null; ListOf lo = m.getListOfCompartments(); Compartment obj = m.getCompartment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_ReadSBML_notes_ListOf() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" + " <notes>My Functions</notes>" + " <functionDefinition/>" + "</listOfFunctionDefinitions>" + "<listOfUnitDefinitions>" + " <notes>My Units</notes>" + " <unitDefinition/>" + "</listOfUnitDefinitions>" + "<listOfCompartments>" + " <notes>My Compartments</notes>" + " <compartment/>" + "</listOfCompartments>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getListOfFunctionDefinitions(); assertEquals( true, sb.isSetNotes() ); string notes = sb.getNotes().getChild(0).getCharacters(); assertTrue( ( "My Functions" != notes ) == false ); sb = M.getListOfUnitDefinitions(); assertEquals( true, sb.isSetNotes() ); notes = sb.getNotes().getChild(0).getCharacters(); assertTrue( ( "My Units" != notes ) == false ); sb = M.getListOfCompartments(); assertEquals( true, sb.isSetNotes() ); notes = sb.getNotes().getChild(0).getCharacters(); assertTrue( ( "My Compartments" != notes ) == false ); }
public void test_ReadSBML_metaid_ListOf() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions metaid='lofd'/>" + "<listOfUnitDefinitions metaid='loud'/>" + "<listOfCompartments metaid='loc'/>" + "<listOfSpecies metaid='los'/>" + "<listOfParameters metaid='lop'/>" + "<listOfRules metaid='lor'/>" + "<listOfReactions metaid='lorx'/>" + "<listOfEvents metaid='loe'/>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getListOfFunctionDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lofd" == sb.getMetaId() )); sb = M.getListOfUnitDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loud" == sb.getMetaId() )); sb = M.getListOfCompartments(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loc" == sb.getMetaId() )); sb = M.getListOfSpecies(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "los" == sb.getMetaId() )); sb = M.getListOfParameters(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lop" == sb.getMetaId() )); sb = M.getListOfRules(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lor" == sb.getMetaId() )); sb = M.getListOfReactions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lorx" == sb.getMetaId() )); sb = M.getListOfEvents(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loe" == sb.getMetaId() )); }