public void test_Reaction_parent_create() { Model m = new Model(2,4); Reaction r = m.createReaction(); ListOf lo = m.getListOfReactions(); assertTrue( lo == m.getReaction(0).getParentSBMLObject() ); assertTrue( lo == r.getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_Reaction_parent_add() { Reaction ia = new Reaction(2,4); Model m = new Model(2,4); ia.setId("k"); m.addReaction(ia); ia = null; ListOf lo = m.getListOfReactions(); assertTrue( lo == m.getReaction(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_Reaction_ancestor_create() { Model m = new Model(2,4); Reaction r = m.createReaction(); ListOf lo = m.getListOfReactions(); assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == null ); Reaction obj = m.getReaction(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_Reaction_ancestor_add() { Reaction ia = new Reaction(2,4); Model m = new Model(2,4); ia.setId("k"); m.addReaction(ia); ia = null; ListOf lo = m.getListOfReactions(); Reaction obj = m.getReaction(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_ReadSBML_metaid_ListOf() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions metaid='lofd'/>" + "<listOfUnitDefinitions metaid='loud'/>" + "<listOfCompartments metaid='loc'/>" + "<listOfSpecies metaid='los'/>" + "<listOfParameters metaid='lop'/>" + "<listOfRules metaid='lor'/>" + "<listOfReactions metaid='lorx'/>" + "<listOfEvents metaid='loe'/>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getListOfFunctionDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lofd" == sb.getMetaId() )); sb = M.getListOfUnitDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loud" == sb.getMetaId() )); sb = M.getListOfCompartments(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loc" == sb.getMetaId() )); sb = M.getListOfSpecies(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "los" == sb.getMetaId() )); sb = M.getListOfParameters(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lop" == sb.getMetaId() )); sb = M.getListOfRules(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lor" == sb.getMetaId() )); sb = M.getListOfReactions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lorx" == sb.getMetaId() )); sb = M.getListOfEvents(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loe" == sb.getMetaId() )); }
public void test_ReadSBML_line_col_numbers() { //setXMLParser(); SBase sb; string s = "<?xml version='1.0' encoding='UTF-8'?>\n" + "<sbml xmlns='http://www.sbml.org/sbml/level2' level='2' version='1'>\n" + " <model id='testModel' name='testModel'>\n" + " <listOfReactions> <reaction/> </listOfReactions>\n" + " </model>\n" + "</sbml>\n"; D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M; sb = M.getListOfReactions(); sb = M.getReaction(0); }