public void test_FunctionDefinition_parent_create() { Model m = new Model(2,4); FunctionDefinition fd = m.createFunctionDefinition(); ListOf lo = m.getListOfFunctionDefinitions(); assertTrue( lo == m.getFunctionDefinition(0).getParentSBMLObject() ); assertTrue( lo == fd.getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
/// <summary> /// [ FunctionDefinitionStruct ] /// [[ Id , Name , String ]] /// <param name="aSBMLmodel"></param> /// </summary> public static List<FunctionDefinitionStruct> getFunctionDefinition(Model aSBMLmodel) { List<FunctionDefinitionStruct> list = new List<FunctionDefinitionStruct>(); ListOfFunctionDefinitions functionDefinitions = aSBMLmodel.getListOfFunctionDefinitions(); for (int i = 0; i < functionDefinitions.size(); i++ ) { FunctionDefinition aFunctionDefinition = aSBMLmodel.getFunctionDefinition(i); string anId_FD = aFunctionDefinition.getId(); string aName_FD = aFunctionDefinition.getName(); ASTNode anASTNode_FD = aFunctionDefinition.getMath(); string aString_FD = libsbml.libsbml.formulaToString(anASTNode_FD ); FunctionDefinitionStruct fd = new FunctionDefinitionStruct( anId_FD, aName_FD, aString_FD); list.Add(fd); } return list; }
public void test_FunctionDefinition_parent_add() { FunctionDefinition fd = new FunctionDefinition(2,4); Model m = new Model(2,4); fd.setId("fd"); fd.setMath(libsbml.parseFormula("l")); m.addFunctionDefinition(fd); fd = null; ListOf lo = m.getListOfFunctionDefinitions(); assertTrue( lo == m.getFunctionDefinition(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_FunctionDefinition_ancestor_create() { Model m = new Model(2,4); FunctionDefinition fd = m.createFunctionDefinition(); ListOf lo = m.getListOfFunctionDefinitions(); assertTrue( fd.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( fd.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( fd.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( fd.getAncestorOfType(libsbml.SBML_EVENT) == null ); FunctionDefinition obj = m.getFunctionDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_FunctionDefinition_ancestor_add() { FunctionDefinition fd = new FunctionDefinition(2,4); Model m = new Model(2,4); fd.setId("fd"); fd.setMath(libsbml.parseFormula("l")); m.addFunctionDefinition(fd); fd = null; ListOf lo = m.getListOfFunctionDefinitions(); FunctionDefinition obj = m.getFunctionDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_ReadSBML_notes_ListOf() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" + " <notes>My Functions</notes>" + " <functionDefinition/>" + "</listOfFunctionDefinitions>" + "<listOfUnitDefinitions>" + " <notes>My Units</notes>" + " <unitDefinition/>" + "</listOfUnitDefinitions>" + "<listOfCompartments>" + " <notes>My Compartments</notes>" + " <compartment/>" + "</listOfCompartments>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getListOfFunctionDefinitions(); assertEquals( true, sb.isSetNotes() ); string notes = sb.getNotes().getChild(0).getCharacters(); assertTrue( ( "My Functions" != notes ) == false ); sb = M.getListOfUnitDefinitions(); assertEquals( true, sb.isSetNotes() ); notes = sb.getNotes().getChild(0).getCharacters(); assertTrue( ( "My Units" != notes ) == false ); sb = M.getListOfCompartments(); assertEquals( true, sb.isSetNotes() ); notes = sb.getNotes().getChild(0).getCharacters(); assertTrue( ( "My Compartments" != notes ) == false ); }
public void test_ReadSBML_metaid_ListOf() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions metaid='lofd'/>" + "<listOfUnitDefinitions metaid='loud'/>" + "<listOfCompartments metaid='loc'/>" + "<listOfSpecies metaid='los'/>" + "<listOfParameters metaid='lop'/>" + "<listOfRules metaid='lor'/>" + "<listOfReactions metaid='lorx'/>" + "<listOfEvents metaid='loe'/>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getListOfFunctionDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lofd" == sb.getMetaId() )); sb = M.getListOfUnitDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loud" == sb.getMetaId() )); sb = M.getListOfCompartments(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loc" == sb.getMetaId() )); sb = M.getListOfSpecies(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "los" == sb.getMetaId() )); sb = M.getListOfParameters(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lop" == sb.getMetaId() )); sb = M.getListOfRules(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lor" == sb.getMetaId() )); sb = M.getListOfReactions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lorx" == sb.getMetaId() )); sb = M.getListOfEvents(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loe" == sb.getMetaId() )); }