public static Phenotype ReadPhenotype(ExtendedBinaryReader reader) { var mimNumber = reader.ReadOptInt32(); var phenotype = reader.ReadAsciiString(); var mapping = (Mapping)reader.ReadByte(); var comments = (Comments)reader.ReadByte(); var inheritance = reader.ReadOptArray(reader.ReadAsciiString); var inheritances = inheritance == null ? null : new HashSet <string>(inheritance); return(new Phenotype(mimNumber, phenotype, mapping, comments, inheritances)); }
public void ReadOptArray_NoElements() { string[] observedStrings; using (var ms = new MemoryStream()) { using (var writer = new ExtendedBinaryWriter(ms, Encoding.UTF8, true)) { writer.WriteOptArray(null as string[], writer.WriteOptAscii); } ms.Position = 0; using (var reader = new ExtendedBinaryReader(ms)) { observedStrings = reader.ReadOptArray(reader.ReadAsciiString); } } Assert.Null(observedStrings); }
public void ReadOptArray_ThreeElements() { var expectedStrings = new[] { "Huey", "Duey", "Louie" }; string[] observedStrings; using (var ms = new MemoryStream()) { using (var writer = new ExtendedBinaryWriter(ms, Encoding.UTF8, true)) { writer.WriteOptArray(expectedStrings, writer.WriteOptAscii); } ms.Position = 0; using (var reader = new ExtendedBinaryReader(ms)) { observedStrings = reader.ReadOptArray(reader.ReadAsciiString); } } Assert.Equal(expectedStrings, observedStrings); }
public ClinVarItem(ExtendedBinaryReader reader) { _alleleOrigins = reader.ReadOptArray(reader.ReadAsciiString)?.ToList(); SaAltAllele = reader.ReadAsciiString(); AltAllele = SaAltAllele != null?SupplementaryAnnotationUtilities.ReverseSaReducedAllele(SaAltAllele) : ""; // A ReferenceAllele = reader.ReadAsciiString(); ID = reader.ReadAsciiString(); ReviewStatus = (ReviewStatusEnum)reader.ReadByte(); IsAlleleSpecific = reader.ReadAsciiString(); _medgenIds = reader.ReadOptArray(reader.ReadAsciiString)?.ToList(); _omimIds = reader.ReadOptArray(reader.ReadAsciiString)?.ToList(); _orphanetIds = reader.ReadOptArray(reader.ReadAsciiString)?.ToList(); _phenotypes = reader.ReadOptArray(reader.ReadUtf8String)?.ToList(); Significance = reader.ReadAsciiString(); LastUpdatedDate = reader.ReadOptInt64(); _pubmedIds = reader.ReadOptArray(reader.ReadOptInt64)?.ToList(); }