public static Phenotype ReadPhenotype(ExtendedBinaryReader reader)
{
var mimNumber = reader.ReadOptInt32();
var phenotype = reader.ReadAsciiString();
var mapping = (Mapping)reader.ReadByte();
var comments = (Comments)reader.ReadByte();
var inheritance = reader.ReadOptArray(reader.ReadAsciiString);
var inheritances = inheritance == null ? null : new HashSet <string>(inheritance);
return(new Phenotype(mimNumber, phenotype, mapping, comments, inheritances));
}
public void ReadOptArray_NoElements()
{
string[] observedStrings;
using (var ms = new MemoryStream())
{
using (var writer = new ExtendedBinaryWriter(ms, Encoding.UTF8, true))
{
writer.WriteOptArray(null as string[], writer.WriteOptAscii);
}
ms.Position = 0;
using (var reader = new ExtendedBinaryReader(ms))
{
observedStrings = reader.ReadOptArray(reader.ReadAsciiString);
}
}
Assert.Null(observedStrings);
}
public void ReadOptArray_ThreeElements()
{
var expectedStrings = new[] { "Huey", "Duey", "Louie" };
string[] observedStrings;
using (var ms = new MemoryStream())
{
using (var writer = new ExtendedBinaryWriter(ms, Encoding.UTF8, true))
{
writer.WriteOptArray(expectedStrings, writer.WriteOptAscii);
}
ms.Position = 0;
using (var reader = new ExtendedBinaryReader(ms))
{
observedStrings = reader.ReadOptArray(reader.ReadAsciiString);
}
}
Assert.Equal(expectedStrings, observedStrings);
}
public ClinVarItem(ExtendedBinaryReader reader)
{
_alleleOrigins = reader.ReadOptArray(reader.ReadAsciiString)?.ToList();
SaAltAllele = reader.ReadAsciiString();
AltAllele = SaAltAllele != null?SupplementaryAnnotationUtilities.ReverseSaReducedAllele(SaAltAllele) : ""; // A
ReferenceAllele = reader.ReadAsciiString();
ID = reader.ReadAsciiString();
ReviewStatus = (ReviewStatusEnum)reader.ReadByte();
IsAlleleSpecific = reader.ReadAsciiString();
_medgenIds = reader.ReadOptArray(reader.ReadAsciiString)?.ToList();
_omimIds = reader.ReadOptArray(reader.ReadAsciiString)?.ToList();
_orphanetIds = reader.ReadOptArray(reader.ReadAsciiString)?.ToList();
_phenotypes = reader.ReadOptArray(reader.ReadUtf8String)?.ToList();
Significance = reader.ReadAsciiString();
LastUpdatedDate = reader.ReadOptInt64();
_pubmedIds = reader.ReadOptArray(reader.ReadOptInt64)?.ToList();
}