public static SupplementaryInterval Read(ExtendedBinaryReader reader, IChromosomeRenamer renamer)
{
var referenceName = reader.ReadAsciiString();
var start = reader.ReadOptInt32();
var end = reader.ReadOptInt32();
var alternateAllele = reader.ReadAsciiString();
var sequenceAlteration = (VariantType)reader.ReadByte();
var source = reader.ReadAsciiString();
// strings
var count = reader.ReadOptInt32();
var stringValues = new Dictionary <string, string>(count);
for (var i = 0; i < count; i++)
{
var key = reader.ReadAsciiString();
var value = reader.ReadAsciiString();
stringValues[key] = value;
}
// integers
count = reader.ReadOptInt32();
var intValues = new Dictionary <string, int>(count);
for (var i = 0; i < count; i++)
{
var key = reader.ReadAsciiString();
var value = reader.ReadOptInt32();
intValues[key] = value;
}
// booleans
count = reader.ReadOptInt32();
var boolList = new List <string>(count);
for (var i = 0; i < count; i++)
{
boolList.Add(reader.ReadAsciiString());
}
// doubles
count = reader.ReadOptInt32();
var doubleValues = new Dictionary <string, double>(count);
for (var i = 0; i < count; i++)
{
var key = reader.ReadAsciiString();
var value = reader.ReadOptDouble();
doubleValues[key] = value;
}
// frequencies
count = reader.ReadOptInt32();
var freqValues = new Dictionary <string, double>(count);
for (var i = 0; i < count; i++)
{
var key = reader.ReadAsciiString();
var value = reader.ReadOptDouble();
freqValues[key] = value;
}
//stringLists
count = reader.ReadOptInt32();
var stringLists = new Dictionary <string, IEnumerable <string> >(count);
for (var i = 0; i < count; i++)
{
var key = reader.ReadAsciiString();
var valueCount = reader.ReadOptInt32();
var values = ReadStringLists(reader, valueCount);
stringLists[key] = values;
}
return(new SupplementaryInterval(start, end, referenceName, alternateAllele, sequenceAlteration, source,
renamer, intValues, doubleValues, freqValues, stringValues, boolList, stringLists));
}
