private void AddButtonOnClick(object sender, EventArgs eventArgs)
{
DataRow2 row = table.NewRow();
row["Internal label"] = "";
row["Terminal label"] = "";
row["Correction factor -2 [%]"] = 0d;
row["Correction factor -1 [%]"] = 0d;
row["Correction factor +1 [%]"] = 0d;
row["Correction factor +2 [%]"] = 0d;
row["TMT like"] = true;
table.AddRow(row);
tableView1.Invalidate(true);
}
private void AddFastaFile(string fileName, string identifierRule, string descriptionRule, string taxonomyRule,
string taxonomyId, string variationRule, string modificationRule)
{
DataRow2 row = table.NewRow();
row["Fasta file path"] = fileName;
row["Exists"] = File.Exists(fileName).ToString();
row["Identifier rule"] = identifierRule;
row["Description rule"] = descriptionRule;
row["Taxonomy rule"] = taxonomyRule;
row["Taxonomy ID"] = taxonomyId;
row["Organism"] = "";
bool success = int.TryParse(taxonomyId, out int taxId);
if (success && TaxonomyItems.taxId2Item.ContainsKey(taxId))
{
string n = TaxonomyItems.taxId2Item[taxId].GetScientificName();
row["Organism"] = n;
}
if (hasVariationData)
{
row["Variation rule"] = variationRule;
}
if (hasModifications)
{
row["Modification rule"] = modificationRule;
}
table.AddRow(row);
}
private ITableModel CreateTable(string[] parseRules, string[] descriptions)
{
table = new DataTable2("parse rules");
table.AddColumn("Parse rule", 90, ColumnType.Text);
table.AddColumn("Description", 170, ColumnType.Text);
for (int i = 0; i < parseRules.Length; i++)
{
DataRow2 row = table.NewRow();
row[0] = parseRules[i];
row[1] = descriptions[i];
table.AddRow(row);
}
return(table);
}
private void TestFile(int minEntry, int maxEntry)
{
Regex nameRegex = !string.IsNullOrEmpty(identifierParseRule) ? new Regex(identifierParseRule) : null;
Regex descriptionRegex = !string.IsNullOrEmpty(descriptionParseRule) ? new Regex(descriptionParseRule) : null;
Regex taxonomyRegex = !string.IsNullOrEmpty(taxonomyParseRule) ? new Regex(taxonomyParseRule) : null;
Regex variationRegex = !string.IsNullOrEmpty(variationParseRule) ? new Regex(variationParseRule) : null;
Regex modificationRegex = !string.IsNullOrEmpty(modificationParseRule) ? new Regex(modificationParseRule) : null;
string[] headers;
string[] sequences;
GetDataFromFile(filePath, minEntry, maxEntry, out headers, out sequences);
tableModel.Clear();
for (int i = 0; i < headers.Length; i++)
{
DataRow2 r = tableModel.NewRow();
string header = headers[i];
r["Sequence"] = sequences[i];
r["Header"] = header;
if (nameRegex != null)
{
r["Identifier"] = nameRegex.Match(header).Groups[1].ToString();
}
if (descriptionRegex != null)
{
r["Description"] = descriptionRegex.Match(header).Groups[1].ToString();
}
if (taxonomyRegex != null)
{
r["Taxonomy ID"] = taxonomyRegex.Match(header).Groups[1].ToString();
}
if (variationRegex != null)
{
r["Variation"] = variationRegex.Match(header).Groups[1].ToString();
}
if (modificationRegex != null)
{
r["Modification"] = modificationRegex.Match(header).Groups[1].ToString();
}
tableModel.AddRow(r);
}
mainTable.Invalidate(true);
}
private ITableModel CreateSearchResultsTable(IList <int> searchInds, IList <int[]> matchingCols)
{
DataTable2 table = new DataTable2("Search results", "Search results");
table.AddColumn("Row", 100, ColumnType.Integer, "");
table.AddColumn("Column", 80, ColumnType.Text, "");
for (int index = 0; index < searchInds.Count; index++)
{
int searchInd = searchInds[index];
for (int i = 0; i < matchingCols[index].Length; i++)
{
string colName = tableModel.GetColumnName(matchingCols[index][i]);
DataRow2 row = table.NewRow();
row["Row"] = searchInd + 1;
row["Column"] = colName;
table.AddRow(row);
}
}
return(table);
}
private ITableModel CreateTable(IList <int> searchInds, IList <int[]> matchingCols)
{
DataTable2 table = new DataTable2("Search results", "Search results");
table.AddColumn("Row", 100, ColumnType.Integer, "");
table.AddColumn("Columns", 80, ColumnType.Text, "");
for (int index = 0; index < searchInds.Count; index++)
{
int searchInd = searchInds[index];
DataRow2 row = table.NewRow();
row["Row"] = searchInd + 1;
string[] colNames = new string[matchingCols[index].Length];
for (int i = 0; i < matchingCols[index].Length; i++)
{
colNames[i] = tableModel.GetColumnName(matchingCols[index][i]);
}
row["Columns"] = StringUtils.Concat(";", colNames);
table.AddRow(row);
}
return(table);
}
