private ITableModel CreateTable(string[] parseRules, string[] descriptions)
{
table = new DataTable2("parse rules");
table.AddColumn("Parse rule", 90, ColumnType.Text);
table.AddColumn("Description", 170, ColumnType.Text);
for (int i = 0; i < parseRules.Length; i++)
{
DataRow2 row = table.NewRow();
row[0] = parseRules[i];
row[1] = descriptions[i];
table.AddRow(row);
}
return(table);
}
private ITableModel CreateSearchResultsTable(IList <int> searchInds, IList <int[]> matchingCols)
{
DataTable2 table = new DataTable2("Search results", "Search results");
table.AddColumn("Row", 100, ColumnType.Integer, "");
table.AddColumn("Column", 80, ColumnType.Text, "");
for (int index = 0; index < searchInds.Count; index++)
{
int searchInd = searchInds[index];
for (int i = 0; i < matchingCols[index].Length; i++)
{
string colName = tableModel.GetColumnName(matchingCols[index][i]);
DataRow2 row = table.NewRow();
row["Row"] = searchInd + 1;
row["Column"] = colName;
table.AddRow(row);
}
}
return(table);
}
private ITableModel CreateTable(IList <int> searchInds, IList <int[]> matchingCols)
{
DataTable2 table = new DataTable2("Search results", "Search results");
table.AddColumn("Row", 100, ColumnType.Integer, "");
table.AddColumn("Columns", 80, ColumnType.Text, "");
for (int index = 0; index < searchInds.Count; index++)
{
int searchInd = searchInds[index];
DataRow2 row = table.NewRow();
row["Row"] = searchInd + 1;
string[] colNames = new string[matchingCols[index].Length];
for (int i = 0; i < matchingCols[index].Length; i++)
{
colNames[i] = tableModel.GetColumnName(matchingCols[index][i]);
}
row["Columns"] = StringUtils.Concat(";", colNames);
table.AddRow(row);
}
return(table);
}
private DataTable2 CreateTable()
{
table = new DataTable2("isobaric labels table");
table.AddColumn("Internal label", 130, ColumnType.Text, "");
table.AddColumn("Terminal label", 130, ColumnType.Text, "");
table.AddColumn("Correction factor -2 [%]", 80, ColumnType.Numeric);
table.AddColumn("Correction factor -1 [%]", 80, ColumnType.Numeric);
table.AddColumn("Correction factor +1 [%]", 80, ColumnType.Numeric);
table.AddColumn("Correction factor +2 [%]", 80, ColumnType.Numeric);
table.AddColumn("TMT like", 60, ColumnType.Boolean);
return(table);
}
private DataTable2 CreateTable()
{
table = new DataTable2("fasta file table");
table.AddColumn("Fasta file path", 250, ColumnType.Text, "Path to the fasta file used in the Andromeda searches.");
table.AddColumn("Exists", 50, ColumnType.Text);
table.AddColumn("Identifier rule", 100, ColumnType.Text);
table.AddColumn("Description rule", 100, ColumnType.Text);
table.AddColumn("Taxonomy rule", 100, ColumnType.Text);
table.AddColumn("Taxonomy ID", 100, ColumnType.Text);
table.AddColumn("Organism", 100, ColumnType.Text);
if (hasVariationData)
{
table.AddColumn("Variation rule", 100, ColumnType.Text);
}
if (hasModifications)
{
table.AddColumn("Modification rule", 100, ColumnType.Text);
}
return(table);
}
private static DataTable2 CreateTable(bool hasVariation, bool hasModification)
{
DataTable2 t = new DataTable2("databases");
t.AddColumn("Header", 250, ColumnType.Text, "");
t.AddColumn("Sequence", 100, ColumnType.Text, "");
t.AddColumn("Identifier", 100, ColumnType.Text, "");
t.AddColumn("Description", 100, ColumnType.Text, "");
t.AddColumn("Taxonomy ID", 100, ColumnType.Text, "");
if (hasVariation)
{
t.AddColumn("Variation", 100, ColumnType.Text, "");
}
if (hasModification)
{
t.AddColumn("Modification", 100, ColumnType.Text, "");
}
return(t);
}
