protected override void Import(Model model)
{
for (long i = 0; i < model.getNumFunctionDefinitions(); i++)
{
_functionDefinitions.Add(model.getFunctionDefinition(i));
}
_astHandler.FunctionDefinitions = _functionDefinitions;
}
private static void printMath(Model m)
{
int n;
for (n = 0; n < m.getNumFunctionDefinitions(); ++n)
{
printFunctionDefinition(n + 1, m.getFunctionDefinition(n));
}
for (n = 0; n < m.getNumRules(); ++n)
{
printRuleMath(n + 1, m.getRule(n));
}
Console.WriteLine();
for (n = 0; n < m.getNumReactions(); ++n)
{
printReactionMath(n + 1, m.getReaction(n));
}
Console.WriteLine();
for (n = 0; n < m.getNumEvents(); ++n)
{
printEventMath(n + 1, m.getEvent(n));
}
}
public void test_Model_addFunctionDefinition4()
{
Model m = new Model(2,2);
FunctionDefinition fd = new FunctionDefinition(2,2);
fd.setId( "fd");
fd.setMath(libsbml.parseFormula("fd"));
FunctionDefinition fd1 = new FunctionDefinition(2,2);
fd1.setId( "fd");
fd1.setMath(libsbml.parseFormula("fd"));
int i = m.addFunctionDefinition(fd);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( m.getNumFunctionDefinitions() == 1 );
i = m.addFunctionDefinition(fd1);
assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID );
assertTrue( m.getNumFunctionDefinitions() == 1 );
fd = null;
fd1 = null;
m = null;
}
public void test_Model_createFunctionDefinition()
{
Model m = new Model(2,2);
FunctionDefinition p = m.createFunctionDefinition();
assertTrue( m.getNumFunctionDefinitions() == 1 );
assertTrue( (p).getLevel() == 2 );
assertTrue( (p).getVersion() == 2 );
m = null;
}
public void test_Model_addFunctionDefinition3()
{
Model m = new Model(2,2);
FunctionDefinition fd = null;
int i = m.addFunctionDefinition(fd);
assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED );
assertTrue( m.getNumFunctionDefinitions() == 0 );
m = null;
}
public void test_Model_addFunctionDefinition2()
{
Model m = new Model(2,2);
FunctionDefinition fd = new FunctionDefinition(2,1);
fd.setId( "fd");
fd.setMath(libsbml.parseFormula("fd"));
int i = m.addFunctionDefinition(fd);
assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
assertTrue( m.getNumFunctionDefinitions() == 0 );
fd = null;
m = null;
}
public void test_ReadSBML_FunctionDefinition_OnlyBVars()
{
FunctionDefinition fd;
SBMLError error;
int numErrors;
ASTNode math;
string formula;
string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" +
" <functionDefinition id='invalid'>" +
" <math xmlns='http://www.w3.org/1998/Math/MathML'>" +
" <lambda>" +
" <bvar><ci> x </ci></bvar>" +
" <bvar><ci> y </ci></bvar>" +
" <bvar><ci> z </ci></bvar>" +
" </lambda>" +
" </math>" +
" </functionDefinition>" +
"</listOfFunctionDefinitions>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
D.checkInternalConsistency();
D.checkConsistency();
numErrors = (int)D.getNumErrors();
assertTrue( numErrors == 1 );
error = D.getError(0);
int errorId = (int)error.getErrorId();
assertTrue( errorId == libsbml.NoBodyInFunctionDef );
assertTrue( M.getNumFunctionDefinitions() == 1 );
fd = M.getFunctionDefinition(0);
assertTrue( fd != null );
assertEquals( true, fd.isSetId() );
assertEquals( false, fd.isSetName() );
assertTrue(( "invalid" == fd.getId() ));
assertTrue( fd.getBody() == null );
assertEquals( true, fd.isSetMath() );
math = fd.getMath();
formula = libsbml.formulaToString(math);
assertTrue( formula != null );
assertTrue(( "lambda(x, y, z)" == formula ));
}
public void test_ReadSBML_FunctionDefinition_MathReturnsCN()
{
FunctionDefinition fd;
ASTNode math;
string formula;
string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" +
" <functionDefinition id='getNumber'>" +
" <math>" +
" <lambda>" +
" <bvar><ci> x </ci></bvar>" +
" <cn> 42 </cn>" +
" </lambda>" +
" </math>" +
" </functionDefinition>" +
"</listOfFunctionDefinitions>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M.getNumFunctionDefinitions() == 1 );
fd = M.getFunctionDefinition(0);
assertTrue( fd != null );
assertEquals( true, fd.isSetId() );
assertEquals( false, fd.isSetName() );
assertTrue(( "getNumber" == fd.getId() ));
assertEquals( true, fd.isSetMath() );
math = fd.getMath();
formula = libsbml.formulaToString(math);
assertTrue( formula != null );
assertTrue(( "lambda(x, 42)" == formula ));
}
public void test_ReadSBML_FunctionDefinition()
{
FunctionDefinition fd;
ASTNode math;
string formula;
string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" +
" <functionDefinition id='pow3' name='cubed'>" +
" <math>" +
" <lambda>" +
" <bvar><ci> x </ci></bvar>" +
" <apply>" +
" <power/>" +
" <ci> x </ci>" +
" <cn> 3 </cn>" +
" </apply>" +
" </lambda>" +
" </math>" +
" </functionDefinition>" +
"</listOfFunctionDefinitions>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M.getNumFunctionDefinitions() == 1 );
fd = M.getFunctionDefinition(0);
assertTrue( fd != null );
assertEquals( true, fd.isSetId() );
assertEquals( true, fd.isSetName() );
assertTrue(( "pow3" == fd.getId() ));
assertTrue(( "cubed" == fd.getName() ));
assertEquals( true, fd.isSetMath() );
math = fd.getMath();
formula = libsbml.formulaToString(math);
assertTrue( formula != null );
assertTrue(( "lambda(x, pow(x, 3))" == formula ));
}
