public void test_create_l1v1_units() { SBMLDocument d; Model m; Compartment c; KineticLaw kl; Parameter p; Reaction r; Species s; SpeciesReference sr; Unit u; UnitDefinition ud; d = new SBMLDocument(); m = new Model(2,4); d.setModel(m); ud = m.createUnitDefinition(); ud.setName( "substance"); u = m.createUnit(); u.setKind(libsbml.UNIT_KIND_MOLE); u.setScale(-3); ud = m.createUnitDefinition(); ud.setName( "mls"); u = m.createUnit(); u.setKind(libsbml.UNIT_KIND_MOLE); u.setScale(-3); u = m.createUnit(); u.setKind(libsbml.UNIT_KIND_LITER); u.setExponent(-1); u = m.createUnit(); u.setKind(libsbml.UNIT_KIND_SECOND); u.setExponent(-1); c = m.createCompartment(); c.setName( "cell"); s = m.createSpecies(); s.setName( "x0"); s.setCompartment( "cell"); s.setInitialAmount(1); s = m.createSpecies(); s.setName( "x1"); s.setCompartment( "cell"); s.setInitialAmount(1); s = m.createSpecies(); s.setName( "s1"); s.setCompartment( "cell"); s.setInitialAmount(1); s = m.createSpecies(); s.setName( "s2"); s.setCompartment( "cell"); s.setInitialAmount(1); p = m.createParameter(); p.setName( "vm"); p.setUnits( "mls"); p.setValue(2); p = m.createParameter(); p.setName( "km"); p.setValue(2); r = m.createReaction(); r.setName( "v1"); sr = m.createReactant(); sr.setSpecies( "x0"); sr = m.createProduct(); sr.setSpecies( "s1"); kl = m.createKineticLaw(); kl.setFormula( "(vm * s1)/(km + s1)"); r = m.createReaction(); r.setName( "v2"); sr = m.createReactant(); sr.setSpecies( "s1"); sr = m.createProduct(); sr.setSpecies( "s2"); kl = m.createKineticLaw(); kl.setFormula( "(vm * s2)/(km + s2)"); r = m.createReaction(); r.setName( "v3"); sr = m.createReactant(); sr.setSpecies( "s2"); sr = m.createProduct(); sr.setSpecies( "x1"); kl = m.createKineticLaw(); kl.setFormula( "(vm * s1)/(km + s1)"); d = null; }
public void test_Parameter_parent_create() { Model m = new Model(2,4); Parameter p = m.createParameter(); ListOf lo = m.getListOfParameters(); assertTrue( lo == m.getParameter(0).getParentSBMLObject() ); assertTrue( lo == p.getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_Model_createParameter() { Model m = new Model(2,2); Parameter p = m.createParameter(); assertTrue( m.getNumParameters() == 1 ); assertTrue( (p).getLevel() == 2 ); assertTrue( (p).getVersion() == 2 ); m = null; }
public void test_Parameter_ancestor_create() { Model m = new Model(2,4); Parameter p = m.createParameter(); ListOf lo = m.getListOfParameters(); assertTrue( p.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( p.getAncestorOfType(libsbml.SBML_EVENT) == null ); Parameter obj = m.getParameter(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_SBML_C_parseL3Formula_modelPresent1() { Model model = new Model(3,1); Parameter p = model.createParameter(); p.setId( "infinity");; ASTNode r = libsbml.parseL3FormulaWithModel("infinity", model); assertTrue( r.getType() == libsbml.AST_NAME ); assertTrue(( "infinity" == r.getName() )); assertTrue( r.getNumChildren() == 0 ); r = null; }