/// <summary>
/// Creates the TopContainer of the Spatial Structure.
/// </summary>
internal void CreateTopContainer(Model model)
{
_topContainer = _objectBaseFactory.Create <IContainer>()
.WithId(SBMLConstants.SBML_TOP_CONTAINER)
.WithName("TOPCONTAINER" + SBMLConstants.SBML + model.getName())
.WithMode(ContainerMode.Logical)
.WithContainerType(ContainerType.Compartment);
}
/// <summary>
/// Creates the Spatial Structure of the SBML Model with the TopContainer.
/// </summary>
internal void CreateSpatialStructureFromModel(IContainer topContainer, Model model)
{
SpatialStructure = _spatialStructureFactory.Create().DowncastTo <IMoBiSpatialStructure>()
.WithName(SBMLConstants.SBML_MODEL + model.getName())
.WithTopContainer(topContainer)
.WithDescription(SBMLConstants.SBML_NOTES + model.getNotesString() + SBMLConstants.SPACE +
SBMLConstants.SBML_METAID + model.getMetaId());
SpatialStructure.AddTopContainer(_eventsTopContainer);
}
private string getProjectName(Model model)
{
var name = String.Empty;
if (model.isSetId())
{
name += model.getId() + SBMLConstants.SPACE;
}
if (model.isSetName())
{
name += model.getName();
}
return(name != string.Empty ? name : SBMLConstants.DEFAULT_PROJECT_NAME);
}
public void test_L3_Model_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(3,1);
sbmlns.addNamespaces(xmlns);
Model m = new Model(sbmlns);
assertTrue( m.getTypeCode() == libsbml.SBML_MODEL );
assertTrue( m.getMetaId() == "" );
assertTrue( m.getNotes() == null );
assertTrue( m.getAnnotation() == null );
assertTrue( m.getLevel() == 3 );
assertTrue( m.getVersion() == 1 );
assertTrue( m.getNamespaces() != null );
assertTrue( m.getNamespaces().getLength() == 2 );
assertTrue( m.getId() == "" );
assertTrue( m.getName() == "" );
assertTrue( m.getSubstanceUnits() == "" );
assertTrue( m.getTimeUnits() == "" );
assertTrue( m.getVolumeUnits() == "" );
assertTrue( m.getAreaUnits() == "" );
assertTrue( m.getLengthUnits() == "" );
assertTrue( m.getConversionFactor() == "" );
assertEquals( false, m.isSetId() );
assertEquals( false, m.isSetName() );
assertEquals( false, m.isSetSubstanceUnits() );
assertEquals( false, m.isSetTimeUnits() );
assertEquals( false, m.isSetVolumeUnits() );
assertEquals( false, m.isSetAreaUnits() );
assertEquals( false, m.isSetLengthUnits() );
assertEquals( false, m.isSetConversionFactor() );
m = null;
}
