public void test_internal_consistency_check_99902() { SBMLDocument d = new SBMLDocument(2,4); long errors; Compartment c = new Compartment(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); c.setCompartmentType("hh"); c.setId("c"); m.addCompartment(c); errors = d.checkInternalConsistency(); assertTrue( errors == 1 ); assertTrue( d.getError(0).getErrorId() == 10103 ); d = null; }
public void test_internal_consistency_check_99903_param() { SBMLDocument d = new SBMLDocument(2,4); long errors; Parameter p = new Parameter(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("cc"); p.setConstant(true); p.setId("c"); m.addParameter(p); Rule r = m.createAssignmentRule(); r.setVariable("c"); r.setFormula("2*3"); errors = d.checkInternalConsistency(); assertTrue( errors == 2 ); d = null; }
public void test_internal_consistency_check_99903_localparam() { SBMLDocument d = new SBMLDocument(2,4); long errors; Parameter p = new Parameter(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("cc"); Reaction r = m.createReaction(); r.setId("r"); KineticLaw kl = r.createKineticLaw(); kl.setFormula("2"); p.setId("p"); p.setConstant(false); kl.addParameter(p); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99916_rule() { SBMLDocument d = new SBMLDocument(2,4); long errors; Species s = new Species(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("c"); s.setId("s"); s.setCompartment("c"); s.setConstant(true); m.addSpecies(s); Rule r = m.createAssignmentRule(); r.setVariable("s"); r.setFormula("2"); errors = d.checkInternalConsistency(); assertTrue( errors == 2 ); d = null; }
public void test_internal_consistency_check_99915_alg() { SBMLDocument d = new SBMLDocument(2,4); long errors; Model m = d.createModel(); Rule r = new AlgebraicRule(2,4); d.setLevelAndVersion(2,1,false); r.setUnits("kk"); m.addRule(r); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99912() { SBMLDocument d = new SBMLDocument(2,4); long errors; FunctionDefinition fd = new FunctionDefinition(2,4); Model m = d.createModel(); d.setLevelAndVersion(1,2,false); Compartment c = m.createCompartment(); c.setId("cc"); c.setConstant(false); m.addFunctionDefinition(fd); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99911_react() { SBMLDocument d = new SBMLDocument(2,4); long errors; Model m = d.createModel(); Reaction r = new Reaction(2,4); d.setLevelAndVersion(2,1,false); r.setId("r"); r.setSBOTerm(2); m.addReaction(r); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99911_model() { SBMLDocument d = new SBMLDocument(2,4); long errors; d.setLevelAndVersion(2,1,false); Model m = new Model(2,4); m.setSBOTerm(2); d.setModel(m); errors = d.checkInternalConsistency(); assertTrue( errors == 1 ); assertTrue( d.getError(0).getErrorId() == 20201 ); d = null; }
public void test_internal_consistency_check_99905_st() { SBMLDocument d = new SBMLDocument(2,4); long errors; SpeciesType ct = new SpeciesType(2,4); Model m = d.createModel(); d.setLevelAndVersion(2,2,false); ct.setId("st"); ct.setSBOTerm(5); m.addSpeciesType(ct); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99904_unitdef() { SBMLDocument d = new SBMLDocument(2,4); long errors; UnitDefinition u = new UnitDefinition(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("cc"); u.setId("ud"); u.setMetaId("mmm"); u.createUnit(); m.addUnitDefinition(u); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99904_rule_rate() { SBMLDocument d = new SBMLDocument(2,4); long errors; Rule r = new RateRule(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("cc"); c.setConstant(false); r.setVariable("cc"); r.setFormula("2"); r.setMetaId("mmm"); m.addRule(r); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99904_react() { SBMLDocument d = new SBMLDocument(2,4); long errors; Reaction r = new Reaction(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("cc"); r.setId("r"); r.setMetaId("mmm"); m.addReaction(r); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99904_param() { SBMLDocument d = new SBMLDocument(2,4); long errors; Parameter p = new Parameter(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("cc"); p.setId("p"); p.setMetaId("mmm"); m.addParameter(p); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99904_model() { SBMLDocument d = new SBMLDocument(2,4); long errors; d.setLevelAndVersion(1,2,false); Model m = new Model(2,4); Compartment c = m.createCompartment(); c.setId("cc"); m.setMetaId("mmm"); d.setModel(m); errors = d.checkInternalConsistency(); assertTrue( errors == 1 ); assertTrue( d.getError(0).getErrorId() == 20201 ); d = null; }
public void test_internal_consistency_check_99904_kl() { SBMLDocument d = new SBMLDocument(2,4); long errors; KineticLaw kl = new KineticLaw(2,4); Model m = d.createModel(); d.setLevelAndVersion(1,2,false); Compartment c = m.createCompartment(); c.setId("cc"); Reaction r = m.createReaction(); r.setId("r"); kl.setFormula("2"); kl.setMetaId("mmm"); r.setKineticLaw(kl); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99911_fd() { SBMLDocument d = new SBMLDocument(2,4); long errors; Model m = d.createModel(); FunctionDefinition fd = new FunctionDefinition(2,4); d.setLevelAndVersion(2,1,false); fd.setId("fd"); fd.setSBOTerm(2); m.addFunctionDefinition(fd); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99911_kl() { SBMLDocument d = new SBMLDocument(2,4); d.setLevelAndVersion(2,1,false); long errors; Model m = d.createModel(); Reaction r = m.createReaction(); r.setId("r"); KineticLaw kl = new KineticLaw(2,4); kl.setSBOTerm(2); Parameter p = kl.createParameter(); p.setId("p"); r.setKineticLaw(kl); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99905_stoichmath() { SBMLDocument d = new SBMLDocument(2,4); long errors; StoichiometryMath sm = new StoichiometryMath(2,4); Model m = d.createModel(); d.setLevelAndVersion(2,2,false); Species s = m.createSpecies(); s.setId("s"); Compartment c = m.createCompartment(); c.setId("c"); s.setCompartment("c"); Reaction r = m.createReaction(); r.setId("r"); SpeciesReference sr = r.createProduct(); sr.setSpecies("s"); sm.setSBOTerm(5); sr.setStoichiometryMath(sm); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99911_param() { SBMLDocument d = new SBMLDocument(2,4); long errors; Model m = d.createModel(); Parameter p = new Parameter(2,4); d.setLevelAndVersion(2,1,false); p.setId("p"); p.setSBOTerm(2); m.addParameter(p); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99905_trigger() { SBMLDocument d = new SBMLDocument(2,4); long errors; Trigger trigger = new Trigger(2,4); Event e = new Event(2,4); Model m = d.createModel(); d.setLevelAndVersion(2,2,false); trigger.setSBOTerm(5); e.setTrigger(trigger); m.addEvent(e); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99911_rule_rate() { SBMLDocument d = new SBMLDocument(2,4); long errors; Model m = d.createModel(); Parameter p = m.createParameter(); p.setId("p"); p.setConstant(false); Rule r = new RateRule(2,4); d.setLevelAndVersion(2,1,false); r.setVariable("p"); r.setSBOTerm(2); m.addRule(r); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99905_unitdef() { SBMLDocument d = new SBMLDocument(2,4); long errors; UnitDefinition u = new UnitDefinition(2,4); d.setLevelAndVersion(2,2,false); Model m = d.createModel(); u.setId("ud"); u.setSBOTerm(9); u.createUnit(); m.addUnitDefinition(u); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99913() { SBMLDocument d = new SBMLDocument(2,4); long errors; InitialAssignment ia = new InitialAssignment(2,4); Model m = d.createModel(); d.setLevelAndVersion(1,2,false); Compartment c = m.createCompartment(); c.setId("cc"); c.setConstant(false); m.addInitialAssignment(ia); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99909() { SBMLDocument d = new SBMLDocument(2,4); long errors; Constraint ct = new Constraint(2,4); Model m = d.createModel(); d.setLevelAndVersion(2,1,false); m.addConstraint(ct); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99915_rate() { SBMLDocument d = new SBMLDocument(2,4); long errors; d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("c"); c.setConstant(false); RateRule r = m.createRateRule(); r.setL1TypeCode(libsbml.SBML_SPECIES_CONCENTRATION_RULE); r.setFormula("2"); r.setVariable("c"); r.setUnits("mmm"); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99911_ea() { SBMLDocument d = new SBMLDocument(2,4); d.setLevelAndVersion(2,1,false); long errors; Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("c"); c.setConstant(false); Event e = m.createEvent(); EventAssignment ea = new EventAssignment(2,4); ea.setVariable("c"); ea.setSBOTerm(2); e.addEventAssignment(ea); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99919() { SBMLDocument d = new SBMLDocument(2,4); long errors; Species s = new Species(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("c"); s.setId("s"); s.setCompartment("c"); s.setHasOnlySubstanceUnits(true); m.addSpecies(s); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99911_event() { SBMLDocument d = new SBMLDocument(2,4); long errors; Event e = new Event(2,4); Model m = d.createModel(); d.setLevelAndVersion(2,1,false); e.setSBOTerm(2); m.addEvent(e); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99921() { SBMLDocument d = new SBMLDocument(2,4); long errors; SpeciesReference sr = new SpeciesReference(2,4); d.setLevelAndVersion(2,1,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("c"); Species s = m.createSpecies(); s.setId("s"); Reaction r = m.createReaction(); r.setId("r"); s.setCompartment("c"); sr.setSpecies("s"); sr.setName("mmm"); r.addReactant(sr); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_internal_consistency_check_99925() { SBMLDocument d = new SBMLDocument(2,4); long errors; Unit u = new Unit(2,4); d.setLevelAndVersion(1,2,false); Model m = d.createModel(); Compartment c = m.createCompartment(); c.setId("cc"); UnitDefinition ud = m.createUnitDefinition(); ud.setId("ud"); u.setKind(libsbml.UNIT_KIND_MOLE); u.setOffset(9); ud.addUnit(u); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }