public void test_internal_consistency_check_99902()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Compartment c = new Compartment(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
c.setCompartmentType("hh");
c.setId("c");
m.addCompartment(c);
errors = d.checkInternalConsistency();
assertTrue( errors == 1 );
assertTrue( d.getError(0).getErrorId() == 10103 );
d = null;
}
public void test_internal_consistency_check_99903_param()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Parameter p = new Parameter(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("cc");
p.setConstant(true);
p.setId("c");
m.addParameter(p);
Rule r = m.createAssignmentRule();
r.setVariable("c");
r.setFormula("2*3");
errors = d.checkInternalConsistency();
assertTrue( errors == 2 );
d = null;
}
public void test_internal_consistency_check_99903_localparam()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Parameter p = new Parameter(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("cc");
Reaction r = m.createReaction();
r.setId("r");
KineticLaw kl = r.createKineticLaw();
kl.setFormula("2");
p.setId("p");
p.setConstant(false);
kl.addParameter(p);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99916_rule()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Species s = new Species(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("c");
s.setId("s");
s.setCompartment("c");
s.setConstant(true);
m.addSpecies(s);
Rule r = m.createAssignmentRule();
r.setVariable("s");
r.setFormula("2");
errors = d.checkInternalConsistency();
assertTrue( errors == 2 );
d = null;
}
public void test_internal_consistency_check_99915_alg()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Model m = d.createModel();
Rule r = new AlgebraicRule(2,4);
d.setLevelAndVersion(2,1,false);
r.setUnits("kk");
m.addRule(r);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99912()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
FunctionDefinition fd = new FunctionDefinition(2,4);
Model m = d.createModel();
d.setLevelAndVersion(1,2,false);
Compartment c = m.createCompartment();
c.setId("cc");
c.setConstant(false);
m.addFunctionDefinition(fd);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99911_react()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Model m = d.createModel();
Reaction r = new Reaction(2,4);
d.setLevelAndVersion(2,1,false);
r.setId("r");
r.setSBOTerm(2);
m.addReaction(r);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99911_model()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
d.setLevelAndVersion(2,1,false);
Model m = new Model(2,4);
m.setSBOTerm(2);
d.setModel(m);
errors = d.checkInternalConsistency();
assertTrue( errors == 1 );
assertTrue( d.getError(0).getErrorId() == 20201 );
d = null;
}
public void test_internal_consistency_check_99905_st()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
SpeciesType ct = new SpeciesType(2,4);
Model m = d.createModel();
d.setLevelAndVersion(2,2,false);
ct.setId("st");
ct.setSBOTerm(5);
m.addSpeciesType(ct);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99904_unitdef()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
UnitDefinition u = new UnitDefinition(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("cc");
u.setId("ud");
u.setMetaId("mmm");
u.createUnit();
m.addUnitDefinition(u);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99904_rule_rate()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Rule r = new RateRule(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("cc");
c.setConstant(false);
r.setVariable("cc");
r.setFormula("2");
r.setMetaId("mmm");
m.addRule(r);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99904_react()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Reaction r = new Reaction(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("cc");
r.setId("r");
r.setMetaId("mmm");
m.addReaction(r);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99904_param()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Parameter p = new Parameter(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("cc");
p.setId("p");
p.setMetaId("mmm");
m.addParameter(p);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99904_model()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
d.setLevelAndVersion(1,2,false);
Model m = new Model(2,4);
Compartment c = m.createCompartment();
c.setId("cc");
m.setMetaId("mmm");
d.setModel(m);
errors = d.checkInternalConsistency();
assertTrue( errors == 1 );
assertTrue( d.getError(0).getErrorId() == 20201 );
d = null;
}
public void test_internal_consistency_check_99904_kl()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
KineticLaw kl = new KineticLaw(2,4);
Model m = d.createModel();
d.setLevelAndVersion(1,2,false);
Compartment c = m.createCompartment();
c.setId("cc");
Reaction r = m.createReaction();
r.setId("r");
kl.setFormula("2");
kl.setMetaId("mmm");
r.setKineticLaw(kl);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99911_fd()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Model m = d.createModel();
FunctionDefinition fd = new FunctionDefinition(2,4);
d.setLevelAndVersion(2,1,false);
fd.setId("fd");
fd.setSBOTerm(2);
m.addFunctionDefinition(fd);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99911_kl()
{
SBMLDocument d = new SBMLDocument(2,4);
d.setLevelAndVersion(2,1,false);
long errors;
Model m = d.createModel();
Reaction r = m.createReaction();
r.setId("r");
KineticLaw kl = new KineticLaw(2,4);
kl.setSBOTerm(2);
Parameter p = kl.createParameter();
p.setId("p");
r.setKineticLaw(kl);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99905_stoichmath()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
StoichiometryMath sm = new StoichiometryMath(2,4);
Model m = d.createModel();
d.setLevelAndVersion(2,2,false);
Species s = m.createSpecies();
s.setId("s");
Compartment c = m.createCompartment();
c.setId("c");
s.setCompartment("c");
Reaction r = m.createReaction();
r.setId("r");
SpeciesReference sr = r.createProduct();
sr.setSpecies("s");
sm.setSBOTerm(5);
sr.setStoichiometryMath(sm);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99911_param()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Model m = d.createModel();
Parameter p = new Parameter(2,4);
d.setLevelAndVersion(2,1,false);
p.setId("p");
p.setSBOTerm(2);
m.addParameter(p);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99905_trigger()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Trigger trigger = new Trigger(2,4);
Event e = new Event(2,4);
Model m = d.createModel();
d.setLevelAndVersion(2,2,false);
trigger.setSBOTerm(5);
e.setTrigger(trigger);
m.addEvent(e);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99911_rule_rate()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Model m = d.createModel();
Parameter p = m.createParameter();
p.setId("p");
p.setConstant(false);
Rule r = new RateRule(2,4);
d.setLevelAndVersion(2,1,false);
r.setVariable("p");
r.setSBOTerm(2);
m.addRule(r);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99905_unitdef()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
UnitDefinition u = new UnitDefinition(2,4);
d.setLevelAndVersion(2,2,false);
Model m = d.createModel();
u.setId("ud");
u.setSBOTerm(9);
u.createUnit();
m.addUnitDefinition(u);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99913()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
InitialAssignment ia = new InitialAssignment(2,4);
Model m = d.createModel();
d.setLevelAndVersion(1,2,false);
Compartment c = m.createCompartment();
c.setId("cc");
c.setConstant(false);
m.addInitialAssignment(ia);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99909()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Constraint ct = new Constraint(2,4);
Model m = d.createModel();
d.setLevelAndVersion(2,1,false);
m.addConstraint(ct);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99915_rate()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("c");
c.setConstant(false);
RateRule r = m.createRateRule();
r.setL1TypeCode(libsbml.SBML_SPECIES_CONCENTRATION_RULE);
r.setFormula("2");
r.setVariable("c");
r.setUnits("mmm");
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99911_ea()
{
SBMLDocument d = new SBMLDocument(2,4);
d.setLevelAndVersion(2,1,false);
long errors;
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("c");
c.setConstant(false);
Event e = m.createEvent();
EventAssignment ea = new EventAssignment(2,4);
ea.setVariable("c");
ea.setSBOTerm(2);
e.addEventAssignment(ea);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99919()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Species s = new Species(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("c");
s.setId("s");
s.setCompartment("c");
s.setHasOnlySubstanceUnits(true);
m.addSpecies(s);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99911_event()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Event e = new Event(2,4);
Model m = d.createModel();
d.setLevelAndVersion(2,1,false);
e.setSBOTerm(2);
m.addEvent(e);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99921()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
SpeciesReference sr = new SpeciesReference(2,4);
d.setLevelAndVersion(2,1,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("c");
Species s = m.createSpecies();
s.setId("s");
Reaction r = m.createReaction();
r.setId("r");
s.setCompartment("c");
sr.setSpecies("s");
sr.setName("mmm");
r.addReactant(sr);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_internal_consistency_check_99925()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Unit u = new Unit(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("cc");
UnitDefinition ud = m.createUnitDefinition();
ud.setId("ud");
u.setKind(libsbml.UNIT_KIND_MOLE);
u.setOffset(9);
ud.addUnit(u);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}