public void test_SBMLDocument_setLevelAndVersion()
{
SBMLDocument d = new SBMLDocument(2,2);
Model m1 = new Model(2,2);
d.setModel(m1);
assertTrue( d.setLevelAndVersion(2,3,false) == true );
assertTrue( d.setLevelAndVersion(2,1,false) == true );
assertTrue( d.setLevelAndVersion(1,2,false) == true );
assertTrue( d.setLevelAndVersion(1,1,false) == false );
d = null;
}
public void test_internal_consistency_check_99911_model()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
d.setLevelAndVersion(2,1,false);
Model m = new Model(2,4);
m.setSBOTerm(2);
d.setModel(m);
errors = d.checkInternalConsistency();
assertTrue( errors == 1 );
assertTrue( d.getError(0).getErrorId() == 20201 );
d = null;
}
public void test_internal_consistency_check_99904_model()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
d.setLevelAndVersion(1,2,false);
Model m = new Model(2,4);
Compartment c = m.createCompartment();
c.setId("cc");
m.setMetaId("mmm");
d.setModel(m);
errors = d.checkInternalConsistency();
assertTrue( errors == 1 );
assertTrue( d.getError(0).getErrorId() == 20201 );
d = null;
}
public void test_SBMLDocument_clone()
{
SBMLDocument o1 = new SBMLDocument();
o1.setLevelAndVersion(1,1,false);
Model m = new Model(1,1);
m.setId("foo");
o1.setModel(m);
assertTrue( o1.getLevel() == 1 );
assertTrue( o1.getVersion() == 1 );
assertTrue( o1.getModel().getId() == "foo" );
assertTrue( o1.getModel().getLevel() == 1 );
assertTrue( o1.getModel().getVersion() == 1 );
assertTrue( o1.getModel().getSBMLDocument() == o1 );
SBMLDocument o2 = o1.clone();
assertTrue( o2.getLevel() == 1 );
assertTrue( o2.getVersion() == 1 );
assertTrue( o2.getModel().getId() == "foo" );
assertTrue( o2.getModel().getLevel() == 1 );
assertTrue( o2.getModel().getVersion() == 1 );
assertTrue( o2.getModel().getSBMLDocument() == o2 );
o2 = null;
o1 = null;
}
public void test_SBMLDocument_setLevelAndVersion_Error()
{
SBMLDocument d = new SBMLDocument();
d.setLevelAndVersion(2,1,true);
Model m1 = new Model(2,1);
Unit u = new Unit(2,1);
u.setKind(libsbml.UnitKind_forName("mole"));
u.setOffset(3.2);
UnitDefinition ud = new UnitDefinition(2,1);
ud.setId( "ud");
ud.addUnit(u);
m1.addUnitDefinition(ud);
d.setModel(m1);
assertTrue( d.setLevelAndVersion(2,2,true) == false );
assertTrue( d.setLevelAndVersion(2,3,true) == false );
assertTrue( d.setLevelAndVersion(1,2,true) == false );
assertTrue( d.setLevelAndVersion(1,1,true) == false );
d = null;
}
public void test_SBMLDocument_setModel3()
{
SBMLDocument d = new SBMLDocument(2,2);
Model m1 = new Model(2,2);
int i = d.setModel(m1);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( d.getModel() != null );
d = null;
}
public void test_SBMLDocument_setModel2()
{
SBMLDocument d = new SBMLDocument(2,2);
Model m1 = new Model(1,2);
int i = d.setModel(m1);
assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH );
assertTrue( d.getModel() == null );
d = null;
}
public void test_SBMLDocument_setModel()
{
SBMLDocument d = new SBMLDocument(2,4);
Model m1 = new Model(2,4);
Model m2 = new Model(2,4);
Model mout;
assertTrue( d.getModel() == null );
int i = d.setModel(m1);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
mout = d.getModel();
assertTrue( mout != null );
assertTrue( mout != m1 );
i = d.setModel(d.getModel());
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
mout = d.getModel();
assertTrue( mout != null );
assertTrue( mout != m1 );
i = d.setModel(m2);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
mout = d.getModel();
assertTrue( mout != null );
assertTrue( mout != m2 );
d = null;
}
public void test_Model_parent_add()
{
SBMLDocument d = new SBMLDocument(2,4);
Model m = new Model(2,4);
d.setModel(m);
assertTrue( d == d.getModel().getParentSBMLObject() );
d = null;
}
public void test_create_l1v1_units()
{
SBMLDocument d;
Model m;
Compartment c;
KineticLaw kl;
Parameter p;
Reaction r;
Species s;
SpeciesReference sr;
Unit u;
UnitDefinition ud;
d = new SBMLDocument();
m = new Model(2,4);
d.setModel(m);
ud = m.createUnitDefinition();
ud.setName( "substance");
u = m.createUnit();
u.setKind(libsbml.UNIT_KIND_MOLE);
u.setScale(-3);
ud = m.createUnitDefinition();
ud.setName( "mls");
u = m.createUnit();
u.setKind(libsbml.UNIT_KIND_MOLE);
u.setScale(-3);
u = m.createUnit();
u.setKind(libsbml.UNIT_KIND_LITER);
u.setExponent(-1);
u = m.createUnit();
u.setKind(libsbml.UNIT_KIND_SECOND);
u.setExponent(-1);
c = m.createCompartment();
c.setName( "cell");
s = m.createSpecies();
s.setName( "x0");
s.setCompartment( "cell");
s.setInitialAmount(1);
s = m.createSpecies();
s.setName( "x1");
s.setCompartment( "cell");
s.setInitialAmount(1);
s = m.createSpecies();
s.setName( "s1");
s.setCompartment( "cell");
s.setInitialAmount(1);
s = m.createSpecies();
s.setName( "s2");
s.setCompartment( "cell");
s.setInitialAmount(1);
p = m.createParameter();
p.setName( "vm");
p.setUnits( "mls");
p.setValue(2);
p = m.createParameter();
p.setName( "km");
p.setValue(2);
r = m.createReaction();
r.setName( "v1");
sr = m.createReactant();
sr.setSpecies( "x0");
sr = m.createProduct();
sr.setSpecies( "s1");
kl = m.createKineticLaw();
kl.setFormula( "(vm * s1)/(km + s1)");
r = m.createReaction();
r.setName( "v2");
sr = m.createReactant();
sr.setSpecies( "s1");
sr = m.createProduct();
sr.setSpecies( "s2");
kl = m.createKineticLaw();
kl.setFormula( "(vm * s2)/(km + s2)");
r = m.createReaction();
r.setName( "v3");
sr = m.createReactant();
sr.setSpecies( "s2");
sr = m.createProduct();
sr.setSpecies( "x1");
kl = m.createKineticLaw();
kl.setFormula( "(vm * s1)/(km + s1)");
d = null;
}
public void test_Model_ancestor_add()
{
SBMLDocument d = new SBMLDocument(2,4);
Model m = new Model(2,4);
d.setModel(m);
assertTrue( d == d.getModel().getAncestorOfType(libsbml.SBML_DOCUMENT) );
d = null;
}
