protected override Task Context()
{
_parameterMapper = A.Fake <ParameterMapper>();
_advancedParameterFactory = A.Fake <IAdvancedParameterFactory>();
_logger = A.Fake <ILogger>();
_advancedParameter = new AdvancedParameter
{
DistributedParameter = DomainHelperForSpecs.NormalDistributedParameter(10, 5),
ParameterPath = "ParameterPath",
Name = "ParameterName"
};
_originalSeed = _advancedParameter.Seed;
sut = new AdvancedParameterMapper(_parameterMapper, _advancedParameterFactory, _entityPathResolver, _logger);
_meanSnapshot = new Parameter
{
Name = _advancedParameter.DistributedParameter.MeanParameter.Name,
};
_deviationSnapshot = new Parameter
{
Name = _advancedParameter.DistributedParameter.DeviationParameter.Name,
};
A.CallTo(() => _parameterMapper.MapToSnapshot(_advancedParameter.DistributedParameter.MeanParameter)).Returns(_meanSnapshot);
A.CallTo(() => _parameterMapper.MapToSnapshot(_advancedParameter.DistributedParameter.DeviationParameter)).Returns(_deviationSnapshot);
return(Task.FromResult(true));
}
protected override void Context()
{
base.Context();
_percentileToSet = 0.8;
_distributedParameter = DomainHelperForSpecs.NormalDistributedParameter();
A.CallTo(() => _executionContext.BuildingBlockContaining(_distributedParameter)).Returns(A.Fake <IPKSimBuildingBlock>());
}
protected override void Context()
{
base.Context();
_organism = new Organism();
_anotherTopContainer = new Container().WithName("Another container");
_spatialStructure = new PKSimSpatialStructure();
_spatialStructure.AddTopContainer(_organism);
_spatialStructure.AddTopContainer(_anotherTopContainer);
_ga = DomainHelperForSpecs.ConstantParameterWithValue().WithName(Constants.Parameters.GESTATIONAL_AGE);
_age = DomainHelperForSpecs.ConstantParameterWithValue().WithName(CoreConstants.Parameters.AGE);
_height = DomainHelperForSpecs.ConstantParameterWithValue().WithName(CoreConstants.Parameters.HEIGHT);
_distributedParameter = DomainHelperForSpecs.NormalDistributedParameter(isDefault: false, distributionParameterIsDefault: false).WithName("Distributed");
_p1 = DomainHelperForSpecs.ConstantParameterWithValue().WithName("P1");
_p2 = DomainHelperForSpecs.ConstantParameterWithValue().WithName("P2");
_organism.Add(_ga);
_organism.Add(_age);
_organism.Add(_height);
_organism.Add(_p1);
_anotherTopContainer.Add(_p2);
_organism.Add(_distributedParameter);
_mean = _distributedParameter.Parameter(Constants.Distribution.MEAN);
_deviation = _distributedParameter.Parameter(Constants.Distribution.DEVIATION);
}
protected override Task Context()
{
_advancedParameterMapper = A.Fake <AdvancedParameterMapper>();
_randomPopulationFactory = A.Fake <IRandomPopulationFactory>();
_randomPopulationSettingsMapper = A.Fake <RandomPopulationSettingsMapper>();
sut = new PopulationMapper(_advancedParameterMapper, _randomPopulationSettingsMapper, _randomPopulationFactory);
_advancedParameters = new AdvancedParameterCollection();
_advancedParameter = new AdvancedParameter
{
DistributedParameter = DomainHelperForSpecs.NormalDistributedParameter()
};
_advancedParameters.AddAdvancedParameter(_advancedParameter);
_advancedParameterSnapshot = new Snapshots.AdvancedParameter();
A.CallTo(() => _advancedParameterMapper.MapToSnapshot(_advancedParameter)).Returns(_advancedParameterSnapshot);
_population = CreateRandomPopulation();
_settingsSnapshot = new PopulationSettings();
A.CallTo(() => _randomPopulationSettingsMapper.MapToSnapshot(_population.Settings)).Returns(_settingsSnapshot);
return(Task.FromResult(true));
}
protected override void Context()
{
_distributedParameter = DomainHelperForSpecs.NormalDistributedParameter();
sut = new AdvancedParameter {
DistributedParameter = _distributedParameter
};
}
protected override void Context()
{
base.Context();
_molecule1RefConcDistribution = DomainHelperForSpecs.NormalDistributedParameter(defaultMean: 4, defaultDeviation: 2).WithId("Molecule1RefConf");
_molecule2HalfLifeIntestineDistribution = DomainHelperForSpecs.NormalDistributedParameter(defaultMean: 6, defaultDeviation: 3).WithId("Molecule2HalfLifeIntestine");
A.CallTo(() => _moleculeParameterFactory.ParameterFor(_molecule1.Name, _molecule1.ReferenceConcentration.Name)).Returns(_molecule1RefConcDistribution);
A.CallTo(() => _moleculeParameterFactory.ParameterFor(_molecule1.Name, _molecule1.HalfLifeLiver.Name)).Returns(null);
A.CallTo(() => _moleculeParameterFactory.ParameterFor(_molecule1.Name, _molecule1.HalfLifeIntestine.Name)).Returns(null);
A.CallTo(() => _moleculeParameterFactory.ParameterFor(_molecule2.Name, _molecule2.ReferenceConcentration.Name)).Returns(null);
A.CallTo(() => _moleculeParameterFactory.ParameterFor(_molecule2.Name, _molecule2.HalfLifeLiver.Name)).Returns(null);
A.CallTo(() => _moleculeParameterFactory.ParameterFor(_molecule2.Name, _molecule2.HalfLifeIntestine.Name)).Returns(_molecule2HalfLifeIntestineDistribution);
_advancedParameterMolecule1RefConc = A.Fake <IAdvancedParameter>().WithName("Molecule1RefConf");
_advancedParameterMolecule1RefConc.ParameterPath = "Path1";
_advancedParameterMolecule2HalfLifeIntestine = A.Fake <IAdvancedParameter>().WithName("Molecule2HalfLifeIntestine");
_advancedParameterMolecule2HalfLifeIntestine.ParameterPath = "Path2";
A.CallTo(() => _advancedParmeterFactory.Create(_molecule1.ReferenceConcentration, DistributionTypes.Normal)).Returns(_advancedParameterMolecule1RefConc);
A.CallTo(() => _advancedParmeterFactory.Create(_molecule2.HalfLifeIntestine, DistributionTypes.Normal)).Returns(_advancedParameterMolecule2HalfLifeIntestine);
}
protected override void Context()
{
base.Context();
_executionContext = A.Fake <IExecutionContext>();
var container = new Container();
var objectPathFactory = new ObjectPathFactoryForSpecs();
_paraWithValueUnchanged1 = DomainHelperForSpecs.ConstantParameterWithValue(1).WithName("para1").WithDimension(A.Fake <IDimension>());
_paraWithValueUnchanged1.IsFixedValue = false;
_paraWithValueChanged2 = DomainHelperForSpecs.ConstantParameterWithValue(2).WithName("para2").WithDimension(A.Fake <IDimension>());
_paraWithValueChanged2.Id = "tralala";
_paraWithValueChanged2.Formula = new ExplicitFormula("15");
_paraWithValueChanged2.Formula.AddObjectPath(objectPathFactory.CreateRelativeFormulaUsablePath(_paraWithValueChanged2, _paraWithValueUnchanged1));
_paraWithValueChanged2.Value = 20;
_paraWithValueUnchanged3 = DomainHelperForSpecs.ConstantParameterWithValue(3).WithName("para3");
_distributedParameter = DomainHelperForSpecs.NormalDistributedParameter().WithName("para4");
_distributedParameter.Value = 1.2;
_distributedParameter.IsFixedValue = false;
_paraWithValueUnchanged3.IsFixedValue = false;
container.Add(_paraWithValueChanged2);
container.Add(_paraWithValueUnchanged1);
container.Add(_paraWithValueUnchanged3);
container.Add(_distributedParameter);
_parameterToReset.Add(_paraWithValueUnchanged1);
_parameterToReset.Add(_paraWithValueChanged2);
_parameterToReset.Add(_paraWithValueUnchanged3);
_parameterToReset.Add(_distributedParameter);
A.CallTo(() => _executionContext.BuildingBlockContaining(_paraWithValueChanged2)).Returns(A.Fake <IPKSimBuildingBlock>());
}
protected override void Context()
{
base.Context();
A.CallTo(() => _formulaTypeMapper.MapFrom(_targetParameter)).Returns(FormulaType.Distribution);
_targetDistributedParameter = DomainHelperForSpecs.NormalDistributedParameter();
_targetParameter = _targetDistributedParameter;
_sourceParameter.Value = 1.2;
_targetParameter.Value = 1.2;
}
protected override void Context()
{
base.Context();
A.CallTo(() => _formulaTypeMapper.MapFrom(_targetParameter)).Returns(FormulaType.Distribution);
A.CallTo(() => _formulaTypeMapper.MapFrom(_sourceParameter)).Returns(FormulaType.Table);
_targetDistributedParameter = DomainHelperForSpecs.NormalDistributedParameter();
_targetParameter = _targetDistributedParameter;
_sourceParameter.Formula = new DistributedTableFormula {
Percentile = 0.2
};
}
protected override void Context()
{
base.Context();
A.CallTo(() => _formulaTypeMapper.MapFrom(_targetParameter)).Returns(FormulaType.Distribution);
var targetDistributedParameter = DomainHelperForSpecs.NormalDistributedParameter();
_targetParameter = targetDistributedParameter;
_sourceParameter.Value = 1.5;
_targetParameter.Value = 1.0;
A.CallTo(() => _executionContext.BuildingBlockContaining(_targetParameter)).Returns(A.Fake <IPKSimBuildingBlock>());
}
protected override void Context()
{
_parameter = DomainHelperForSpecs.NormalDistributedParameter();
_oldPercentile = _parameter.Percentile;
_parameter.Id = "tralala";
_executionContext = A.Fake <IExecutionContext>();
A.CallTo(() => _executionContext.Get <IParameter>(_parameter.Id)).Returns(_parameter);
A.CallTo(() => _executionContext.BuildingBlockContaining(_parameter)).Returns(A.Fake <IPKSimBuildingBlock>());
_percentile = 0.4;
_parameter.IsFixedValue = true;
sut = new SetParameterPercentileCommand(_parameter, _percentile);
}
protected override async Task Context()
{
await base.Context();
_snapshot = await sut.MapToSnapshot(_advancedParameter);
_parameter = DomainHelperForSpecs.ConstantParameterWithValue(5);
_mappedAdvancedParameter = new AdvancedParameter {
DistributedParameter = DomainHelperForSpecs.NormalDistributedParameter()
};
_pathCache = new PathCacheForSpecs <IParameter> {
{ _advancedParameter.ParameterPath, _parameter }
};
A.CallTo(() => _advancedParameterFactory.Create(_parameter, DistributionTypes.ById(_snapshot.DistributionType))).Returns(_mappedAdvancedParameter);
}
protected override void Context()
{
base.Context();
var container = new Container();
_valueToSet = 1.2;
_parameter = DomainHelperForSpecs.NormalDistributedParameter()
.WithId("Id")
.WithDimension(_dimension)
.WithName("P1");
container.Add(_parameter);
_parameter.DisplayUnit = _unit;
_executionContext = A.Fake <IExecutionContext>();
A.CallTo(() => _executionContext.Get <IParameter>(_parameter.Id)).Returns(_parameter);
A.CallTo(() => _executionContext.BuildingBlockContaining(_parameter)).Returns(A.Fake <IPKSimBuildingBlock>());
_oldValue = _parameter.Value;
sut = new SetParameterValueCommand(_parameter, _valueToSet);
}
protected override void Context()
{
base.Context();
_distributedParameter = DomainHelperForSpecs.NormalDistributedParameter();
_result = DistributionMetaData.From(_distributedParameter);
}
