protected override void Context()
{
_entityPathResolver = new EntityPathResolverForSpecs();
_representationInfoRepository = new RepresentationInfoRepositoryForSpecs();
sut = new PKSimPathToPathElementsMapper(_representationInfoRepository, _entityPathResolver);
_organism = new Organism();
_venousBlood = new Organ().WithName(CoreConstants.Organ.VenousBlood).WithParentContainer(_organism);
_liver = new Organ().WithName(CoreConstants.Organ.Liver).WithParentContainer(_organism);
_kidney = new Organ().WithName(CoreConstants.Organ.Kidney).WithParentContainer(_organism);
_liverInt = new Compartment().WithName(CoreConstants.Compartment.Interstitial).WithParentContainer(_liver);
_liverCell = new Compartment().WithName(CoreConstants.Compartment.Intracellular).WithParentContainer(_liver);
_kidneyUrine = new Compartment().WithName(CoreConstants.Compartment.URINE).WithParentContainer(_kidney);
_gallBladder = new Organ().WithName(CoreConstants.Organ.Gallbladder).WithParentContainer(_organism);
_lumen = new Organ().WithName(CoreConstants.Organ.Lumen).WithParentContainer(_organism);
_peripheralVenousBlood = new Container().WithName(CoreConstants.Organ.PeripheralVenousBlood).WithParentContainer(_organism);
_smallIntestine = new Organ().WithName(CoreConstants.Organ.SmallIntestine).WithParentContainer(_organism);
_mucosa = new Compartment().WithName(CoreConstants.Compartment.Mucosa).WithParentContainer(_smallIntestine);
_mucosa_duo = new Compartment().WithName(CoreConstants.Compartment.Duodenum).WithParentContainer(_mucosa);
_mucosa_duo_interstitial = new Compartment().WithName(CoreConstants.Compartment.Interstitial).WithParentContainer(_mucosa_duo);
_events = new Container().WithName(Constants.EVENTS);
_eventGroup = new EventGroup().WithName("E1").WithParentContainer(_events);
_plasma = new Compartment().WithName(CoreConstants.Compartment.Plasma).WithParentContainer(_venousBlood);
_drugContainerVenousBlood = new Container().WithName(_drugName).WithContainerType(ContainerType.Molecule).WithParentContainer(_venousBlood);
_drugContainerPeripheralVenousBlood = new Container().WithName(_drugName).WithContainerType(ContainerType.Molecule).WithParentContainer(_peripheralVenousBlood);
_drugContainerGallBladder = new Container().WithName(_drugName).WithContainerType(ContainerType.Molecule).WithParentContainer(_gallBladder);
_drugContainerInLumen = new Container().WithName(_drugName).WithContainerType(ContainerType.Molecule).WithParentContainer(_lumen);
_drugContainerInLiverCell = new Container().WithName(_drugName).WithContainerType(ContainerType.Molecule).WithParentContainer(_liverCell);
_drug = new MoleculeAmount().WithName(_drugName).WithParentContainer(_plasma);
_drugUrineKidney = new MoleculeAmount().WithName(_drugName).WithParentContainer(_kidneyUrine);
_applications = new Container().WithName(Constants.APPLICATIONS);
_application1 = new EventGroup().WithName("App").WithParentContainer(_applications).WithContainerType(ContainerType.EventGroup);
_formulation = new Container().WithName("F1").WithParentContainer(_application1);
_neighborhoods = new Container().WithName(Constants.NEIGHBORHOODS);
_liverCellToLiverIntNeighborhood = new Neighborhood {
FirstNeighbor = _liverInt, SecondNeighbor = _liverCell
}.WithParentContainer(_neighborhoods);
_concentrationDimension = DomainHelperForSpecs.ConcentrationDimensionForSpecs();
_fractionDimension = DomainHelperForSpecs.FractionDimensionForSpecs();
}
protected override void Context()
{
_dimensionRepository = A.Fake <IDimensionRepository>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_lazyLoadTask = A.Fake <ILazyLoadTask>();
_observedCurveDataMapper = A.Fake <IDataRepositoryToObservedCurveDataMapper>();
_statisticalAnalysis = new PopulationStatisticalAnalysis();
_genderField = ChartDataHelperForSpecs.CreateGenderField();
_statisticalAnalysis.Add(_genderField);
_statisticalAnalysis.Add(_outputFieldVenousBloodPlasma);
_statisticalAnalysis.Add(_outputFieldLiverCell);
_predefinedStatisticalAggregation = new PredefinedStatisticalAggregation {
Selected = true
};
_percentileStatisticalAggregation = new PercentileStatisticalAggregation {
Selected = false, Percentile = 50
};
_statisticalAnalysis.AddStatistic(_predefinedStatisticalAggregation);
_statisticalAnalysis.AddStatistic(_percentileStatisticalAggregation);
A.CallTo(() => _representationInfoRepository.DisplayNameFor(_predefinedStatisticalAggregation)).Returns(_singleCurveId);
A.CallTo(() => _representationInfoRepository.DisplayNameFor(_percentileStatisticalAggregation)).Returns(_percentileId);
_statisticalDataCalculator = new StatisticalDataCalculator();
_pivotResultCreator = A.Fake <IPivotResultCreator>();
_mergedDimensionVenousBloodPlasma = DomainHelperForSpecs.ConcentrationDimensionForSpecs();
_mergedDimensionLiverCell = DomainHelperForSpecs.FractionDimensionForSpecs();
A.CallTo(() => _dimensionRepository.MergedDimensionFor(A <IWithDimension> ._))
.WhenArgumentsMatch((IWithDimension context) => Equals((context as NumericFieldContext)?.NumericValueField, _outputFieldVenousBloodPlasma))
.Returns(_mergedDimensionVenousBloodPlasma);
A.CallTo(() => _dimensionRepository.MergedDimensionFor(A <IWithDimension> ._))
.WhenArgumentsMatch((IWithDimension context) => Equals((context as NumericFieldContext)?.NumericValueField, _outputFieldLiverCell))
.Returns(_mergedDimensionLiverCell);
sut = new TimeProfileChartDataCreator(_dimensionRepository, _pivotResultCreator, _representationInfoRepository,
_statisticalDataCalculator, _lazyLoadTask, _observedCurveDataMapper);
}
