//---------------------------------------------------------------------
public override void Initialize()
{
Timestep = parameters.Timestep;
selectedspecies = parameters.SelectedSpecies;
tstep = parameters.Timestep;
cohorts = PlugIn.ModelCore.GetSiteVar <Landis.Extension.Succession.BiomassPnET.ISiteCohorts>("Succession.CohortsPnET");
woodyDebris = PlugIn.ModelCore.GetSiteVar <Landis.Library.Biomass.Pool>("Succession.WoodyDebris");
litter = PlugIn.ModelCore.GetSiteVar <Landis.Library.Biomass.Pool>("Succession.Litter");
if (parameters.CohortsPerSpecies != null)
{
CohortsPerSpc = new OutputVariable(parameters.CohortsPerSpecies, "#");
}
if (parameters.SpeciesBiom != null)
{
Biomass = new OutputVariable(parameters.SpeciesBiom, "g/m2");
Biomass.output_table_ecoregions = new OutputTableEcoregions(Biomass.MapNameTemplate);
}
if (parameters.SpeciesAbovegroundBiom != null)
{
AbovegroundBiomass = new OutputVariable(parameters.SpeciesAbovegroundBiom, "g/m2");
AbovegroundBiomass.output_table_ecoregions = new OutputTableEcoregions(AbovegroundBiomass.MapNameTemplate);
}
if (parameters.SpeciesWoodySenescence != null)
{
WoodySenescence = new OutputVariable(parameters.SpeciesWoodySenescence, "g/m2");
WoodySenescence.output_table_ecoregions = new OutputTableEcoregions(WoodySenescence.MapNameTemplate);
}
if (parameters.SpeciesFoliageSenescence != null)
{
FoliageSenescence = new OutputVariable(parameters.SpeciesFoliageSenescence, "g/m2");
FoliageSenescence.output_table_ecoregions = new OutputTableEcoregions(FoliageSenescence.MapNameTemplate);
}
if (parameters.AETAvg != null)
{
AETAvg = new OutputVariable(parameters.AETAvg, "");
AETAvg.output_table_ecoregions = new OutputTableEcoregions(AETAvg.MapNameTemplate);
}
if (parameters.BelowgroundBiomass != null)
{
BelowGround = new OutputVariable(parameters.BelowgroundBiomass, "g/m2");
}
if (parameters.LeafAreaIndex != null)
{
LAI = new OutputVariable(parameters.LeafAreaIndex, "m2");
LAI.output_table_ecoregions = new OutputTableEcoregions(LAI.MapNameTemplate);
}
if (parameters.MonthlyFolResp != null)
{
MonthlyFolResp = new OutputVariable(parameters.MonthlyFolResp, "gC/mo");
}
if (parameters.MonthlyGrossPsn != null)
{
MonthlyGrossPsn = new OutputVariable(parameters.MonthlyGrossPsn, "gC/mo");
}
if (parameters.MonthlyMaintResp != null)
{
MonthlyMaintResp = new OutputVariable(parameters.MonthlyMaintResp, "gC/mo");
}
if (parameters.MonthlyNetPsn != null)
{
MonthlyNetPsn = new OutputVariable(parameters.MonthlyNetPsn, "gC/mo");
}
if (parameters.EstablishmentProbability != null)
{
EstablishmentProbability = new OutputVariable(parameters.EstablishmentProbability, "");
}
if (parameters.SpeciesEst != null)
{
SpeciesEstablishment = new OutputVariable(parameters.SpeciesEst, "");
}
if (parameters.Water != null)
{
Water = new OutputVariable(parameters.Water, "mm");
Water.output_table_ecoregions = new OutputTableEcoregions(Water.MapNameTemplate);
}
if (parameters.SubCanopyPAR != null)
{
SubCanopyPAR = new OutputVariable(parameters.SubCanopyPAR, "W/m2 or mmol/m2");
}
if (parameters.Litter != null)
{
NonWoodyDebris = new OutputVariable(parameters.Litter, "g/m2");
}
if (parameters.WoodyDebris != null)
{
WoodyDebris = new OutputVariable(parameters.WoodyDebris, "g/m2");
}
if (parameters.AgeDistribution != null)
{
AgeDistribution = new OutputVariable(parameters.AgeDistribution, "yr");
}
if (parameters.AnnualPsn != null)
{
AnnualPsn = new OutputVariable(parameters.AnnualPsn, "g/m2");
}
if (parameters.CohortBalance != null)
{
overalloutputs = new OutputAggregatedTable(parameters.CohortBalance);
}
MetadataHandler.InitializeMetadata(Timestep, LAI, Biomass, AbovegroundBiomass, EstablishmentProbability,
SpeciesWasThere, AnnualPsn, BelowGround, CohortsPerSpc, Water, SubCanopyPAR, NonWoodyDebris,
WoodyDebris, AgeDistribution, MonthlyFolResp, MonthlyGrossPsn, MonthlyNetPsn, MonthlyMaintResp,
SpeciesEstablishment, LastBiom, overalloutputs, parameters.CohortBalance);
}
public static void InitializeMetadata(int Timestep, OutputVariable LAI, OutputVariable Biomass, OutputVariable AbovegroundBiomass, OutputVariable EstablishmentProbability, ISiteVar <Landis.Library.Parameters.Species.AuxParm <bool> > SpeciesWasThere, OutputVariable AnnualPsn, OutputVariable BelowGround, OutputVariable CohortsPerSpc, OutputVariable Water, OutputVariable SubCanopyPAR, OutputVariable NonWoodyDebris, OutputVariable WoodyDebris, OutputVariable AgeDistribution, OutputVariable MonthlyFolResp, OutputVariable MonthlyGrossPsn, OutputVariable MonthlyNetPsn, OutputVariable MonthlyMaintResp, OutputVariable SpeciesEstablishment, ISiteVar <Library.Parameters.Species.AuxParm <int> > LastBiom, OutputAggregatedTable overalloutputs, string OutputTableMap)
{
ScenarioReplicationMetadata scenRep = new ScenarioReplicationMetadata()
{
RasterOutCellArea = PlugIn.ModelCore.CellArea,
TimeMin = PlugIn.ModelCore.StartTime,
TimeMax = PlugIn.ModelCore.EndTime,
};
Extension = new ExtensionMetadata(PlugIn.ModelCore)
//Extension = new ExtensionMetadata()
{
Name = PlugIn.ExtensionName,
TimeInterval = Timestep,
ScenarioReplicationMetadata = scenRep
};
//---------------------------------------
// table outputs:
//---------------------------------------
if (overalloutputs != null)
{
PlugIn.ModelCore.UI.WriteLine(" Generating summary table...");
CreateDirectory(OutputTableMap);
OutputMetadata tblOut_OverallOutputs = new OutputMetadata()
{
Type = OutputType.Table,
Name = Path.GetFileName(OutputTableMap),
FilePath = OutputTableMap,
Map_DataType = MapDataType.Continuous,
Visualize = true,
};
tblOut_OverallOutputs.RetriveFields(typeof(OutputAggregatedTable));
Extension.OutputMetadatas.Add(tblOut_OverallOutputs);
}
//---------------------------------------
// map outputs:
//---------------------------------------
//OutputMetadata mapOut_BiomassRemoved = new OutputMetadata()
//{
// Type = OutputType.Map,
// Name = "biomass removed",
// FilePath = @HarvestMapName,
// Map_DataType = MapDataType.Continuous,
// Map_Unit = FieldUnits.Mg_ha,
// Visualize = true,
//};
//Extension.OutputMetadatas.Add(mapOut_BiomassRemoved);
if (LAI != null)
{
OutputMetadata mapOut_LAI = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(LAI.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(LAI.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_LAI);
}
if (Biomass != null)
{
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
OutputMetadata mapOut_Biomass = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(Biomass.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(Biomass.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Biomass);
}
}
if (AbovegroundBiomass != null)
{
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
OutputMetadata mapOut_AbvBiomass = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(AbovegroundBiomass.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(AbovegroundBiomass.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_AbvBiomass);
}
}
if (MonthlyFolResp != null)
{
OutputMetadata mapOut_Monthly = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(MonthlyFolResp.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(MonthlyFolResp.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Monthly);
}
if (MonthlyGrossPsn != null)
{
OutputMetadata mapOut_Monthly = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(MonthlyGrossPsn.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(MonthlyGrossPsn.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Monthly);
}
if (MonthlyNetPsn != null)
{
OutputMetadata mapOut_Monthly = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(MonthlyNetPsn.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(MonthlyNetPsn.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Monthly);
}
if (MonthlyMaintResp != null)
{
OutputMetadata mapOut_Monthly = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(MonthlyMaintResp.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(MonthlyMaintResp.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Monthly);
}
if (BelowGround != null)
{
OutputMetadata mapOut_BelowGround = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(BelowGround.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(BelowGround.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_BelowGround);
}
if (CohortsPerSpc != null)
{
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
OutputMetadata mapOut_LAI = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(CohortsPerSpc.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(CohortsPerSpc.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_LAI);
}
}
if (EstablishmentProbability != null)
{
foreach (ISpecies spc in PlugIn.SelectedSpecies)
{
OutputMetadata mapOut_EProb = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(EstablishmentProbability.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(EstablishmentProbability.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_EProb);
}
}
if (SpeciesEstablishment != null)
{
if (SpeciesWasThere != null)
{
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
OutputMetadata mapOut_SpeciesE = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(SpeciesEstablishment.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(SpeciesEstablishment.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_SpeciesE);
}
}
OutputMetadata mapOut_SpeciesE2 = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(SpeciesEstablishment.MapNameTemplate).Replace(".img", ".txt"),
FilePath = FileNames.ReplaceTemplateVars(SpeciesEstablishment.MapNameTemplate).Replace(".img", ".txt"),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_SpeciesE2);
}
if (AnnualPsn != null)
{
if (LastBiom != null)
{
foreach (ISpecies spc in PlugIn.ModelCore.Species)
{
OutputMetadata mapOut_AnnualPsn = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(AnnualPsn.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(AnnualPsn.MapNameTemplate, spc.Name, PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_AnnualPsn);
}
}
}
if (Water != null)
{
OutputMetadata mapOut_Water = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(Water.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(Water.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_Water);
}
if (SubCanopyPAR != null)
{
OutputMetadata mapOut_SubCanopyPAR = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(SubCanopyPAR.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(SubCanopyPAR.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_SubCanopyPAR);
}
if (NonWoodyDebris != null)
{
OutputMetadata mapOut_NonWoodyDebris = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(NonWoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(NonWoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_NonWoodyDebris);
}
if (WoodyDebris != null)
{
OutputMetadata mapOut_WoodyDebris = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(WoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(WoodyDebris.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_WoodyDebris);
}
if (AgeDistribution != null)
{
OutputMetadata mapOut_AgeDistribution = new OutputMetadata()
{
Type = OutputType.Map,
Name = FileNames.ReplaceTemplateVars(AgeDistribution.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
FilePath = FileNames.ReplaceTemplateVars(AgeDistribution.MapNameTemplate, "", PlugIn.ModelCore.CurrentTime),
Map_DataType = MapDataType.Continuous,
Visualize = true,
//Map_Unit = "categorical",
};
Extension.OutputMetadatas.Add(mapOut_AgeDistribution);
}
//---------------------------------------
MetadataProvider mp = new MetadataProvider(Extension);
mp.WriteMetadataToXMLFile("Metadata", Extension.Name, Extension.Name);
}
//---------------------------------------------------------------------
public override void Initialize()
{
Timestep = parameters.Timestep;
selectedspecies = parameters.SelectedSpecies;
tstep = parameters.Timestep;
cohorts = PlugIn.ModelCore.GetSiteVar<Landis.Extension.Succession.BiomassPnET.ISiteCohorts>("Succession.CohortsPnET");
woodyDebris = PlugIn.ModelCore.GetSiteVar<Landis.Library.Biomass.Pool>("Succession.WoodyDebris");
litter = PlugIn.ModelCore.GetSiteVar<Landis.Library.Biomass.Pool>("Succession.Litter");
if (parameters.CohortsPerSpecies != null) CohortsPerSpc = new OutputVariable(parameters.CohortsPerSpecies, "#");
if (parameters.SpeciesBiom != null)
{
Biomass = new OutputVariable(parameters.SpeciesBiom, "g/m2");
Biomass.output_table_ecoregions = new OutputTableEcoregions(Biomass.MapNameTemplate);
}
if (parameters.SpeciesAbovegroundBiom != null)
{
AbovegroundBiomass = new OutputVariable(parameters.SpeciesAbovegroundBiom, "g/m2");
AbovegroundBiomass.output_table_ecoregions = new OutputTableEcoregions(AbovegroundBiomass.MapNameTemplate);
}
if (parameters.SpeciesWoodySenescence != null)
{
WoodySenescence = new OutputVariable(parameters.SpeciesWoodySenescence, "g/m2");
WoodySenescence.output_table_ecoregions = new OutputTableEcoregions(WoodySenescence.MapNameTemplate);
}
if (parameters.SpeciesFoliageSenescence != null)
{
FoliageSenescence = new OutputVariable(parameters.SpeciesFoliageSenescence, "g/m2");
FoliageSenescence.output_table_ecoregions = new OutputTableEcoregions(FoliageSenescence.MapNameTemplate);
}
if (parameters.BelowgroundBiomass != null) BelowGround = new OutputVariable(parameters.BelowgroundBiomass, "g/m2");
if (parameters.LeafAreaIndex != null)
{
LAI = new OutputVariable(parameters.LeafAreaIndex, "m2");
LAI.output_table_ecoregions = new OutputTableEcoregions(LAI.MapNameTemplate);
}
if (parameters.MonthlyFolResp != null)
{
MonthlyFolResp = new OutputVariable(parameters.MonthlyFolResp, "gC/mo");
}
if (parameters.MonthlyGrossPsn != null)
{
MonthlyGrossPsn = new OutputVariable(parameters.MonthlyGrossPsn, "gC/mo");
}
if (parameters.MonthlyMaintResp != null)
{
MonthlyMaintResp = new OutputVariable(parameters.MonthlyMaintResp, "gC/mo");
}
if (parameters.MonthlyNetPsn != null)
{
MonthlyNetPsn = new OutputVariable(parameters.MonthlyNetPsn, "gC/mo");
}
if (parameters.EstablishmentProbability != null)
{
EstablishmentProbability = new OutputVariable(parameters.EstablishmentProbability, "");
}
if (parameters.SpeciesEst != null)
{
SpeciesEstablishment = new OutputVariable(parameters.SpeciesEst, "");
}
if (parameters.Water != null)
{
Water = new OutputVariable(parameters.Water, "mm");
Water.output_table_ecoregions = new OutputTableEcoregions(Water.MapNameTemplate);
}
if (parameters.SubCanopyPAR != null) SubCanopyPAR = new OutputVariable(parameters.SubCanopyPAR, "W/m2 pr mmol/m2");
if (parameters.Litter != null) NonWoodyDebris = new OutputVariable(parameters.Litter, "g/m2");
if (parameters.WoodyDebris != null) WoodyDebris = new OutputVariable(parameters.WoodyDebris, "g/m2");
if (parameters.AgeDistribution != null) AgeDistribution = new OutputVariable(parameters.AgeDistribution,"yr");
if (parameters.AnnualPsn != null) AnnualPsn = new OutputVariable(parameters.AnnualPsn, "g/m2");
if (parameters.CohortBalance != null) overalloutputs = new OutputAggregatedTable(parameters.CohortBalance);
}
