public EGFRResultPage(YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity) : base(egfrMutationAnalysisTestOrder, accessionOrder)
{
this.m_PanelSetOrder = egfrMutationAnalysisTestOrder;
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_PageHeaderText = "EGFR Results For: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_PanelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_PanelSetOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null)
{
this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
}
InitializeComponent();
DataContext = this;
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonNext);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults);
}
public EGFRResultPath(string reportNo,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.UI.Navigation.PageNavigator pageNavigator,
System.Windows.Window window)
: base(pageNavigator, window)
{
this.m_AccessionOrder = accessionOrder;
this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(reportNo);
}
public EGFRResultPath(string reportNo,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.UI.Navigation.PageNavigator pageNavigator,
System.Windows.Window window)
: base(pageNavigator, window)
{
this.m_AccessionOrder = accessionOrder;
this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(reportNo);
}
public virtual void SetResult(YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder, string mutation)
{
egfrMutationAnalysisTestOrder.Result = this.m_Result;
egfrMutationAnalysisTestOrder.Comment = this.m_Comment;
egfrMutationAnalysisTestOrder.Indication = this.m_Indication;
egfrMutationAnalysisTestOrder.Method = this.m_Method;
egfrMutationAnalysisTestOrder.ReportReferences = this.m_References;
egfrMutationAnalysisTestOrder.Interpretation = this.m_Interpretation;
egfrMutationAnalysisTestOrder.ResultCode = this.m_ResultCode;
}
public void Clear(YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder)
{
egfrMutationAnalysisTestOrder.Result = null;
egfrMutationAnalysisTestOrder.Comment = null;
egfrMutationAnalysisTestOrder.Indication = null;
egfrMutationAnalysisTestOrder.Method = null;
egfrMutationAnalysisTestOrder.ReportReferences = null;
egfrMutationAnalysisTestOrder.TumorNucleiPercentage = null;
egfrMutationAnalysisTestOrder.MicrodissectionPerformed = false;
egfrMutationAnalysisTestOrder.Interpretation = null;
egfrMutationAnalysisTestOrder.Mutation = null;
egfrMutationAnalysisTestOrder.ResultCode = null;
}
public EGFRResultPage(YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity)
{
this.m_EGFRMutationAnalysisTestOrder = egfrMutationAnalysisTestOrder;
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_PageHeaderText = "EGFR Results For: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRMutationAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRMutationAnalysisTestOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null) this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
InitializeComponent();
DataContext = this;
}
public EGFRToALKReflexPage(YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder testOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity,
System.Windows.Visibility backButtonVisibility)
: base(testOrder, accessionOrder)
{
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_BackButtonVisibility = backButtonVisibility;
this.m_EGFRToALKReflexAnalysisTestOrder = testOrder;
this.m_EGFRToALKReflexAnalysisTestOrder.SetStatus(this.m_AccessionOrder.PanelSetOrderCollection);
this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
}
else if(this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder();
}
this.m_PageHeaderText = this.m_EGFRToALKReflexAnalysisTestOrder.PanelSetName + " for: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null) this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
this.m_EGFRToALKReflexAnalysisResult = new Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisResult(this.m_AccessionOrder, this.m_EGFRToALKReflexAnalysisTestOrder);
InitializeComponent();
this.DataContext = this;
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonBack);
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonFinish);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults);
}
public EGFRToALKReflexPage(YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder testOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity,
System.Windows.Visibility backButtonVisibility) : base(testOrder, accessionOrder)
{
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_BackButtonVisibility = backButtonVisibility;
this.m_EGFRToALKReflexAnalysisTestOrder = testOrder;
this.m_EGFRToALKReflexAnalysisTestOrder.SetStatus(this.m_AccessionOrder.PanelSetOrderCollection);
this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder();
}
this.m_PageHeaderText = this.m_EGFRToALKReflexAnalysisTestOrder.PanelSetName + " for: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null)
{
this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
}
InitializeComponent();
this.DataContext = this;
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonBack);
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonFinish);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults);
}
public override string ToResultString(Business.Test.AccessionOrder accessionOrder)
{
StringBuilder result = new StringBuilder();
result.AppendLine("EGFR Mutation Analysis");
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true)
{
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
result.AppendLine(egfrMutationAnalysisTestOrder.ToResultString(accessionOrder));
}
result.AppendLine();
result.AppendLine("ALK For NSCLC By FISH");
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkForNSCLCByFISHTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
if (accessionOrder.PanelSetOrderCollection.Exists(alkForNSCLCByFISHTest.PanelSetId) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
result.AppendLine(alkForNSCLCByFISHTestOrder.ToResultString(accessionOrder));
}
result.AppendLine();
result.AppendLine("Interpretation:");
result.AppendLine(this.m_Interpretation);
result.AppendLine();
return(result.ToString());
}
public override void Render()
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\EGFR.5.xml";
base.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
this.SetCaseHistory();
YellowstonePathology.Business.Document.AmendmentSection amendmentSection = new YellowstonePathology.Business.Document.AmendmentSection();
amendmentSection.SetAmendment(m_PanelSetOrder.AmendmentCollection, this.m_ReportXml, this.m_NameSpaceManager, true);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_PanelSetOrder;
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(egfrMutationAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(egfrMutationAnalysisTestOrder.OrderedOn, egfrMutationAnalysisTestOrder.OrderedOnId);
string specimenDescription = specimenOrder.Description + ", Block " + aliquotOrder.Label;
this.ReplaceText("specimen_description", specimenDescription);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.SetXMLNodeParagraphData("report_result", egfrMutationAnalysisTestOrder.Result);
this.SetXMLNodeParagraphData("report_comment", egfrMutationAnalysisTestOrder.Comment);
this.SetXMLNodeParagraphData("report_interpretation", egfrMutationAnalysisTestOrder.Interpretation);
this.ReplaceText("report_indication", egfrMutationAnalysisTestOrder.Indication);
this.ReplaceText("tumor_nuclei_percentage", egfrMutationAnalysisTestOrder.TumorNucleiPercentage);
if (egfrMutationAnalysisTestOrder.MicrodisectionPerformed == true)
{
this.ReplaceText("microdisection_performed", "Yes");
}
else
{
this.ReplaceText("microdisection_performed", "No");
}
this.SetXMLNodeParagraphData("report_method", egfrMutationAnalysisTestOrder.Method);
this.SetXMLNodeParagraphData("report_references", egfrMutationAnalysisTestOrder.References);
this.ReplaceText("report_date", BaseData.GetShortDateString(this.m_PanelSetOrder.FinalDate));
this.ReplaceText("pathologist_signature", this.m_PanelSetOrder.Signature);
this.SaveReport();
}
public EGFRToALKReflexAnalysisEGFRResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder)
: base(accessionOrder, 60)
{
if (this.m_Final == true)
{
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_PanelSetOrder;
this.m_EGFRMutationAnalysisResult = YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisResultFactory.GetResult(egfrMutationAnalysisTestOrder.ResultCode);
this.m_ResultAbbreviation = this.m_EGFRMutationAnalysisResult.ResultAbbreviation;
}
}
public override void ToXml(XElement document)
{
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
if (egfrMutationAnalysisTestOrder != null)
{
this.AddHeader(document, egfrToALKReflexAnalysisTestOrder, egfrToALKReflexAnalysisTestOrder.PanelSetName);
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("EGFR Mutation Analysis: " + egfrMutationAnalysisTestOrder.Result, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Comment: ", document, "F");
this.HandleLongString(egfrMutationAnalysisTestOrder.Comment, document, "F");
this.AddNextObxElement("", document, "F");
}
if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.ALKForNSCLCByFISHResult) == false)
{
this.AddNextObxElement("ALK Rearrangement Analysis: " + egfrToALKReflexAnalysisTestOrder.ALKForNSCLCByFISHResult, document, "F");
this.AddNextObxElement("", document, "F");
}
if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.ROS1ByFISHResult) == false)
{
this.AddNextObxElement("ROS1 Rearrangement Analysis: " + egfrToALKReflexAnalysisTestOrder.ROS1ByFISHResult, document, "F");
this.AddNextObxElement("", document, "F");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.PDL1SP142StainPercent) == false)
{
this.AddNextObxElement("PD-L1 (SP142): " + egfrToALKReflexAnalysisTestOrder.PDL1SP142StainPercent, document, "F");
this.AddNextObxElement("", document, "F");
}
if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.PDL122C3Result) == false)
{
this.AddNextObxElement("PD-L1 (22C3): " + egfrToALKReflexAnalysisTestOrder.PDL122C3Result, document, "F");
this.AddNextObxElement("", document, "F");
}
if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.BRAFMutationAnalysisResult) == false)
{
this.AddNextObxElement("BRAF Mutation Analysis: " + egfrToALKReflexAnalysisTestOrder.BRAFMutationAnalysisResult, document, "F");
this.AddNextObxElement("", document, "F");
}
if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.Comment) == false)
{
this.AddNextObxElement("QNS: " + EGFRToALKReflexAnalysisTestOrder.QNSStatement, document, "F");
this.AddNextObxElement("", document, "F");
}
this.AddNextObxElement("Pathologist: " + egfrToALKReflexAnalysisTestOrder.Signature, document, "F");
if (egfrToALKReflexAnalysisTestOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + egfrToALKReflexAnalysisTestOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Interpretation, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Method: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Method, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.ReportReferences, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement(egfrToALKReflexAnalysisTestOrder.GetLocationPerformedComment(), document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
public override void Render()
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\EGFRToALKReflexAnalysis.4.xml";
this.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(124);
base.ReplaceText("report_title", egfrToALKReflexAnalysisTestOrder.PanelSetName);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
base.ReplaceText("egfr_result", egfrMutationAnalysisTestOrder.Result);
base.SetXMLNodeParagraphData("egfr_comment", egfrMutationAnalysisTestOrder.Comment);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult();
if (egfrMutationAnalysisTestOrder.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
base.ReplaceText("alk_result", "Not Indicated");
base.ReplaceText("ros1_result", "Not Indicated");
base.ReplaceText("pdl1_result", "Not Indicated");
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrder.Result);
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately();
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrderReportedSeparately.Result);
}
else if (egfrToALKReflexAnalysisTestOrder.QNSForALK == true)
{
base.ReplaceText("alk_result", "Quantity not sufficient to perform ALK");
}
else
{
base.ReplaceText("alk_result", "ALK not performed");
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
base.ReplaceText("ros1_result", ros1ByFISHTestOrder.Result);
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(215) == true)
{
YellowstonePathology.Business.Test.PDL1.PDL1TestOrder pdl1TestOrder = (YellowstonePathology.Business.Test.PDL1.PDL1TestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(215);
base.ReplaceText("pdl1_result", pdl1TestOrder.Result);
}
if (egfrToALKReflexAnalysisTestOrder.QNSForPDL1 == true)
{
base.ReplaceText("pdl1_result", "Quantity not sufficient to perform PDL-1");
}
base.SetXMLNodeParagraphData("report_interpretation", egfrToALKReflexAnalysisTestOrder.Interpretation);
this.ReplaceText("report_date", BaseData.GetShortDateString(egfrToALKReflexAnalysisTestOrder.FinalDate));
this.ReplaceText("pathologist_signature", egfrToALKReflexAnalysisTestOrder.Signature);
this.SetXMLNodeParagraphData("report_method", egfrToALKReflexAnalysisTestOrder.Method);
this.SetXMLNodeParagraphData("report_references", egfrToALKReflexAnalysisTestOrder.References);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(egfrToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(egfrToALKReflexAnalysisTestOrder.OrderedOn, egfrMutationAnalysisTestOrder.OrderedOnId);
string specimenDescription = specimenOrder.Description + ", Block " + aliquotOrder.Label;
this.ReplaceText("specimen_description", specimenDescription);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.ReplaceText("tumor_nuclei_percentage", egfrToALKReflexAnalysisTestOrder.TumorNucleiPercentage);
this.SaveReport();
}
public void SetResults(YellowstonePathology.Business.Test.AccessionOrder accessionOrder)
{
StringBuilder interpretation = new StringBuilder();
StringBuilder method = new StringBuilder();
StringBuilder references = new StringBuilder();
if (accessionOrder.PanelSetOrderCollection.Exists(60) == true)
{
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
interpretation.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.Interpretation);
references.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.References);
method.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.Method);
}
if (accessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
references.AppendLine();
references.AppendLine("ALK: " + alkForNSCLCByFISHTestOrder.References);
interpretation.AppendLine();
interpretation.AppendLine("ALK: " + alkForNSCLCByFISHTestOrder.Interpretation);
method.AppendLine();
method.AppendLine("ALK: " + alkForNSCLCByFISHTestOrder.Method);
}
if (accessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
//references.AppendLine();
//references.AppendLine("ROS1: " + ros1ByFISHTestOrder.References);
interpretation.AppendLine();
interpretation.AppendLine("ROS1: " + ros1ByFISHTestOrder.Interpretation);
method.AppendLine();
method.AppendLine("ROS1: " + ros1ByFISHTestOrder.Method);
}
char[] lineFeedCharacters = { '\r', '\n' };
this.Interpretation = interpretation.ToString().TrimEnd(lineFeedCharacters);
this.Method = method.ToString().TrimEnd(lineFeedCharacters);
this.References = references.ToString().TrimEnd(lineFeedCharacters);
}
public override void ToXml(XElement document)
{
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
this.AddHeader(document, egfrToALKReflexAnalysisTestOrder, egfrToALKReflexAnalysisTestOrder.PanelSetName);
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("EGFR Mutation Analysis: " + egfrMutationAnalysisTestOrder.Result, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Comment: ", document, "F");
this.HandleLongString(egfrMutationAnalysisTestOrder.Comment, document, "F");
this.AddNextObxElement("", document, "F");
string alkResult = "ALK not performed";
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkFoNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
alkResult = alkFoNSCLCByFISHTestOrder.Result;
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately();
alkResult = alkForNSCLCByFISHTestOrderReportedSeparately.Result;
}
this.AddNextObxElement("ALK Rearrangement Analysis: " + alkResult, document, "F");
this.AddNextObxElement("", document, "F");
string ros1Result = null;
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
ros1Result = ros1ByFISHTestOrder.Result;
}
this.AddNextObxElement("ROS1 Rearrangement Analysis: " + ros1Result, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Pathologist: " + egfrToALKReflexAnalysisTestOrder.Signature, document, "F");
if (egfrToALKReflexAnalysisTestOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + egfrToALKReflexAnalysisTestOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Interpretation, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Method: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Method, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.References, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement(egfrToALKReflexAnalysisTestOrder.GetLocationPerformedComment(), document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
