public EGFRResultPage(YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder, YellowstonePathology.Business.Test.AccessionOrder accessionOrder, YellowstonePathology.Business.User.SystemIdentity systemIdentity) : base(egfrMutationAnalysisTestOrder, accessionOrder) { this.m_PanelSetOrder = egfrMutationAnalysisTestOrder; this.m_AccessionOrder = accessionOrder; this.m_SystemIdentity = systemIdentity; this.m_PageHeaderText = "EGFR Results For: " + this.m_AccessionOrder.PatientDisplayName; YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_PanelSetOrder.OrderedOnId); YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_PanelSetOrder.OrderedOnId); this.m_OrderedOnDescription = specimenOrder.Description; if (aliquotOrder != null) { this.m_OrderedOnDescription += ": " + aliquotOrder.Label; } InitializeComponent(); DataContext = this; this.m_ControlsNotDisabledOnFinal.Add(this.ButtonNext); this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument); this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults); }
public EGFRResultPath(string reportNo, YellowstonePathology.Business.Test.AccessionOrder accessionOrder, YellowstonePathology.UI.Navigation.PageNavigator pageNavigator, System.Windows.Window window) : base(pageNavigator, window) { this.m_AccessionOrder = accessionOrder; this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(reportNo); }
public EGFRResultPath(string reportNo, YellowstonePathology.Business.Test.AccessionOrder accessionOrder, YellowstonePathology.UI.Navigation.PageNavigator pageNavigator, System.Windows.Window window) : base(pageNavigator, window) { this.m_AccessionOrder = accessionOrder; this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(reportNo); }
public virtual void SetResult(YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder, string mutation) { egfrMutationAnalysisTestOrder.Result = this.m_Result; egfrMutationAnalysisTestOrder.Comment = this.m_Comment; egfrMutationAnalysisTestOrder.Indication = this.m_Indication; egfrMutationAnalysisTestOrder.Method = this.m_Method; egfrMutationAnalysisTestOrder.ReportReferences = this.m_References; egfrMutationAnalysisTestOrder.Interpretation = this.m_Interpretation; egfrMutationAnalysisTestOrder.ResultCode = this.m_ResultCode; }
public void Clear(YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder) { egfrMutationAnalysisTestOrder.Result = null; egfrMutationAnalysisTestOrder.Comment = null; egfrMutationAnalysisTestOrder.Indication = null; egfrMutationAnalysisTestOrder.Method = null; egfrMutationAnalysisTestOrder.ReportReferences = null; egfrMutationAnalysisTestOrder.TumorNucleiPercentage = null; egfrMutationAnalysisTestOrder.MicrodissectionPerformed = false; egfrMutationAnalysisTestOrder.Interpretation = null; egfrMutationAnalysisTestOrder.Mutation = null; egfrMutationAnalysisTestOrder.ResultCode = null; }
public EGFRResultPage(YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder, YellowstonePathology.Business.Test.AccessionOrder accessionOrder, YellowstonePathology.Business.User.SystemIdentity systemIdentity) { this.m_EGFRMutationAnalysisTestOrder = egfrMutationAnalysisTestOrder; this.m_AccessionOrder = accessionOrder; this.m_SystemIdentity = systemIdentity; this.m_PageHeaderText = "EGFR Results For: " + this.m_AccessionOrder.PatientDisplayName; YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRMutationAnalysisTestOrder.OrderedOnId); YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRMutationAnalysisTestOrder.OrderedOnId); this.m_OrderedOnDescription = specimenOrder.Description; if (aliquotOrder != null) this.m_OrderedOnDescription += ": " + aliquotOrder.Label; InitializeComponent(); DataContext = this; }
public EGFRToALKReflexPage(YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder testOrder, YellowstonePathology.Business.Test.AccessionOrder accessionOrder, YellowstonePathology.Business.User.SystemIdentity systemIdentity, System.Windows.Visibility backButtonVisibility) : base(testOrder, accessionOrder) { this.m_AccessionOrder = accessionOrder; this.m_SystemIdentity = systemIdentity; this.m_BackButtonVisibility = backButtonVisibility; this.m_EGFRToALKReflexAnalysisTestOrder = testOrder; this.m_EGFRToALKReflexAnalysisTestOrder.SetStatus(this.m_AccessionOrder.PanelSetOrderCollection); this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60); if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true) { this.m_ALKForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131); } else if(this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true) { this.m_ALKForNSCLCByFISHTestOrder = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder(); } this.m_PageHeaderText = this.m_EGFRToALKReflexAnalysisTestOrder.PanelSetName + " for: " + this.m_AccessionOrder.PatientDisplayName; YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId); YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId); this.m_OrderedOnDescription = specimenOrder.Description; if (aliquotOrder != null) this.m_OrderedOnDescription += ": " + aliquotOrder.Label; this.m_EGFRToALKReflexAnalysisResult = new Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisResult(this.m_AccessionOrder, this.m_EGFRToALKReflexAnalysisTestOrder); InitializeComponent(); this.DataContext = this; this.m_ControlsNotDisabledOnFinal.Add(this.ButtonBack); this.m_ControlsNotDisabledOnFinal.Add(this.ButtonFinish); this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument); this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults); }
public EGFRToALKReflexPage(YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder testOrder, YellowstonePathology.Business.Test.AccessionOrder accessionOrder, YellowstonePathology.Business.User.SystemIdentity systemIdentity, System.Windows.Visibility backButtonVisibility) : base(testOrder, accessionOrder) { this.m_AccessionOrder = accessionOrder; this.m_SystemIdentity = systemIdentity; this.m_BackButtonVisibility = backButtonVisibility; this.m_EGFRToALKReflexAnalysisTestOrder = testOrder; this.m_EGFRToALKReflexAnalysisTestOrder.SetStatus(this.m_AccessionOrder.PanelSetOrderCollection); this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60); if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true) { this.m_ALKForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131); } else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true) { this.m_ALKForNSCLCByFISHTestOrder = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder(); } this.m_PageHeaderText = this.m_EGFRToALKReflexAnalysisTestOrder.PanelSetName + " for: " + this.m_AccessionOrder.PatientDisplayName; YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId); YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId); this.m_OrderedOnDescription = specimenOrder.Description; if (aliquotOrder != null) { this.m_OrderedOnDescription += ": " + aliquotOrder.Label; } InitializeComponent(); this.DataContext = this; this.m_ControlsNotDisabledOnFinal.Add(this.ButtonBack); this.m_ControlsNotDisabledOnFinal.Add(this.ButtonFinish); this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument); this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults); }
public override string ToResultString(Business.Test.AccessionOrder accessionOrder) { StringBuilder result = new StringBuilder(); result.AppendLine("EGFR Mutation Analysis"); YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest(); if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true) { YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60); result.AppendLine(egfrMutationAnalysisTestOrder.ToResultString(accessionOrder)); } result.AppendLine(); result.AppendLine("ALK For NSCLC By FISH"); YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkForNSCLCByFISHTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest(); if (accessionOrder.PanelSetOrderCollection.Exists(alkForNSCLCByFISHTest.PanelSetId) == true) { YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131); result.AppendLine(alkForNSCLCByFISHTestOrder.ToResultString(accessionOrder)); } result.AppendLine(); result.AppendLine("Interpretation:"); result.AppendLine(this.m_Interpretation); result.AppendLine(); return(result.ToString()); }
public override void Render() { this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\EGFR.5.xml"; base.OpenTemplate(); this.SetDemographicsV2(); this.SetReportDistribution(); this.SetCaseHistory(); YellowstonePathology.Business.Document.AmendmentSection amendmentSection = new YellowstonePathology.Business.Document.AmendmentSection(); amendmentSection.SetAmendment(m_PanelSetOrder.AmendmentCollection, this.m_ReportXml, this.m_NameSpaceManager, true); YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_PanelSetOrder; YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(egfrMutationAnalysisTestOrder.OrderedOnId); YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(egfrMutationAnalysisTestOrder.OrderedOn, egfrMutationAnalysisTestOrder.OrderedOnId); string specimenDescription = specimenOrder.Description + ", Block " + aliquotOrder.Label; this.ReplaceText("specimen_description", specimenDescription); string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime); this.SetXmlNodeData("date_time_collected", collectionDateTimeString); this.SetXMLNodeParagraphData("report_result", egfrMutationAnalysisTestOrder.Result); this.SetXMLNodeParagraphData("report_comment", egfrMutationAnalysisTestOrder.Comment); this.SetXMLNodeParagraphData("report_interpretation", egfrMutationAnalysisTestOrder.Interpretation); this.ReplaceText("report_indication", egfrMutationAnalysisTestOrder.Indication); this.ReplaceText("tumor_nuclei_percentage", egfrMutationAnalysisTestOrder.TumorNucleiPercentage); if (egfrMutationAnalysisTestOrder.MicrodisectionPerformed == true) { this.ReplaceText("microdisection_performed", "Yes"); } else { this.ReplaceText("microdisection_performed", "No"); } this.SetXMLNodeParagraphData("report_method", egfrMutationAnalysisTestOrder.Method); this.SetXMLNodeParagraphData("report_references", egfrMutationAnalysisTestOrder.References); this.ReplaceText("report_date", BaseData.GetShortDateString(this.m_PanelSetOrder.FinalDate)); this.ReplaceText("pathologist_signature", this.m_PanelSetOrder.Signature); this.SaveReport(); }
public EGFRToALKReflexAnalysisEGFRResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder) : base(accessionOrder, 60) { if (this.m_Final == true) { YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_PanelSetOrder; this.m_EGFRMutationAnalysisResult = YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisResultFactory.GetResult(egfrMutationAnalysisTestOrder.ResultCode); this.m_ResultAbbreviation = this.m_EGFRMutationAnalysisResult.ResultAbbreviation; } }
public override void ToXml(XElement document) { YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo); YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60); if (egfrMutationAnalysisTestOrder != null) { this.AddHeader(document, egfrToALKReflexAnalysisTestOrder, egfrToALKReflexAnalysisTestOrder.PanelSetName); this.AddNextObxElement("", document, "F"); this.AddNextObxElement("EGFR Mutation Analysis: " + egfrMutationAnalysisTestOrder.Result, document, "F"); this.AddNextObxElement("", document, "F"); this.AddNextObxElement("Comment: ", document, "F"); this.HandleLongString(egfrMutationAnalysisTestOrder.Comment, document, "F"); this.AddNextObxElement("", document, "F"); } if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.ALKForNSCLCByFISHResult) == false) { this.AddNextObxElement("ALK Rearrangement Analysis: " + egfrToALKReflexAnalysisTestOrder.ALKForNSCLCByFISHResult, document, "F"); this.AddNextObxElement("", document, "F"); } if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.ROS1ByFISHResult) == false) { this.AddNextObxElement("ROS1 Rearrangement Analysis: " + egfrToALKReflexAnalysisTestOrder.ROS1ByFISHResult, document, "F"); this.AddNextObxElement("", document, "F"); } if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.PDL1SP142StainPercent) == false) { this.AddNextObxElement("PD-L1 (SP142): " + egfrToALKReflexAnalysisTestOrder.PDL1SP142StainPercent, document, "F"); this.AddNextObxElement("", document, "F"); } if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.PDL122C3Result) == false) { this.AddNextObxElement("PD-L1 (22C3): " + egfrToALKReflexAnalysisTestOrder.PDL122C3Result, document, "F"); this.AddNextObxElement("", document, "F"); } if (String.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.BRAFMutationAnalysisResult) == false) { this.AddNextObxElement("BRAF Mutation Analysis: " + egfrToALKReflexAnalysisTestOrder.BRAFMutationAnalysisResult, document, "F"); this.AddNextObxElement("", document, "F"); } if (string.IsNullOrEmpty(egfrToALKReflexAnalysisTestOrder.Comment) == false) { this.AddNextObxElement("QNS: " + EGFRToALKReflexAnalysisTestOrder.QNSStatement, document, "F"); this.AddNextObxElement("", document, "F"); } this.AddNextObxElement("Pathologist: " + egfrToALKReflexAnalysisTestOrder.Signature, document, "F"); if (egfrToALKReflexAnalysisTestOrder.FinalTime.HasValue == true) { this.AddNextObxElement("E-signed " + egfrToALKReflexAnalysisTestOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F"); } this.AddNextObxElement("", document, "F"); this.AddAmendments(document); this.AddNextObxElement("Interpretation: ", document, "F"); this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Interpretation, document, "F"); this.AddNextObxElement("", document, "F"); this.AddNextObxElement("Method: ", document, "F"); this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Method, document, "F"); this.AddNextObxElement("", document, "F"); this.AddNextObxElement("References: ", document, "F"); this.HandleLongString(egfrToALKReflexAnalysisTestOrder.ReportReferences, document, "F"); this.AddNextObxElement("", document, "F"); this.AddNextObxElement(egfrToALKReflexAnalysisTestOrder.GetLocationPerformedComment(), document, "F"); this.AddNextObxElement(string.Empty, document, "F"); }
public override void Render() { this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\EGFRToALKReflexAnalysis.4.xml"; this.OpenTemplate(); this.SetDemographicsV2(); this.SetReportDistribution(); YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(124); base.ReplaceText("report_title", egfrToALKReflexAnalysisTestOrder.PanelSetName); YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60); base.ReplaceText("egfr_result", egfrMutationAnalysisTestOrder.Result); base.SetXMLNodeParagraphData("egfr_comment", egfrMutationAnalysisTestOrder.Comment); YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult(); if (egfrMutationAnalysisTestOrder.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode) { base.ReplaceText("alk_result", "Not Indicated"); base.ReplaceText("ros1_result", "Not Indicated"); base.ReplaceText("pdl1_result", "Not Indicated"); } if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true) { YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131); base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrder.Result); } else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true) { YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately(); base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrderReportedSeparately.Result); } else if (egfrToALKReflexAnalysisTestOrder.QNSForALK == true) { base.ReplaceText("alk_result", "Quantity not sufficient to perform ALK"); } else { base.ReplaceText("alk_result", "ALK not performed"); } if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true) { YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204); base.ReplaceText("ros1_result", ros1ByFISHTestOrder.Result); } if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(215) == true) { YellowstonePathology.Business.Test.PDL1.PDL1TestOrder pdl1TestOrder = (YellowstonePathology.Business.Test.PDL1.PDL1TestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(215); base.ReplaceText("pdl1_result", pdl1TestOrder.Result); } if (egfrToALKReflexAnalysisTestOrder.QNSForPDL1 == true) { base.ReplaceText("pdl1_result", "Quantity not sufficient to perform PDL-1"); } base.SetXMLNodeParagraphData("report_interpretation", egfrToALKReflexAnalysisTestOrder.Interpretation); this.ReplaceText("report_date", BaseData.GetShortDateString(egfrToALKReflexAnalysisTestOrder.FinalDate)); this.ReplaceText("pathologist_signature", egfrToALKReflexAnalysisTestOrder.Signature); this.SetXMLNodeParagraphData("report_method", egfrToALKReflexAnalysisTestOrder.Method); this.SetXMLNodeParagraphData("report_references", egfrToALKReflexAnalysisTestOrder.References); YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(egfrToALKReflexAnalysisTestOrder.OrderedOnId); YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(egfrToALKReflexAnalysisTestOrder.OrderedOn, egfrMutationAnalysisTestOrder.OrderedOnId); string specimenDescription = specimenOrder.Description + ", Block " + aliquotOrder.Label; this.ReplaceText("specimen_description", specimenDescription); string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime); this.SetXmlNodeData("date_time_collected", collectionDateTimeString); this.ReplaceText("tumor_nuclei_percentage", egfrToALKReflexAnalysisTestOrder.TumorNucleiPercentage); this.SaveReport(); }
public void SetResults(YellowstonePathology.Business.Test.AccessionOrder accessionOrder) { StringBuilder interpretation = new StringBuilder(); StringBuilder method = new StringBuilder(); StringBuilder references = new StringBuilder(); if (accessionOrder.PanelSetOrderCollection.Exists(60) == true) { YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60); interpretation.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.Interpretation); references.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.References); method.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.Method); } if (accessionOrder.PanelSetOrderCollection.Exists(131) == true) { YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131); references.AppendLine(); references.AppendLine("ALK: " + alkForNSCLCByFISHTestOrder.References); interpretation.AppendLine(); interpretation.AppendLine("ALK: " + alkForNSCLCByFISHTestOrder.Interpretation); method.AppendLine(); method.AppendLine("ALK: " + alkForNSCLCByFISHTestOrder.Method); } if (accessionOrder.PanelSetOrderCollection.Exists(204) == true) { YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204); //references.AppendLine(); //references.AppendLine("ROS1: " + ros1ByFISHTestOrder.References); interpretation.AppendLine(); interpretation.AppendLine("ROS1: " + ros1ByFISHTestOrder.Interpretation); method.AppendLine(); method.AppendLine("ROS1: " + ros1ByFISHTestOrder.Method); } char[] lineFeedCharacters = { '\r', '\n' }; this.Interpretation = interpretation.ToString().TrimEnd(lineFeedCharacters); this.Method = method.ToString().TrimEnd(lineFeedCharacters); this.References = references.ToString().TrimEnd(lineFeedCharacters); }
public override void ToXml(XElement document) { YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo); YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60); this.AddHeader(document, egfrToALKReflexAnalysisTestOrder, egfrToALKReflexAnalysisTestOrder.PanelSetName); this.AddNextObxElement("", document, "F"); this.AddNextObxElement("EGFR Mutation Analysis: " + egfrMutationAnalysisTestOrder.Result, document, "F"); this.AddNextObxElement("", document, "F"); this.AddNextObxElement("Comment: ", document, "F"); this.HandleLongString(egfrMutationAnalysisTestOrder.Comment, document, "F"); this.AddNextObxElement("", document, "F"); string alkResult = "ALK not performed"; if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true) { YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkFoNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131); alkResult = alkFoNSCLCByFISHTestOrder.Result; } else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true) { YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately(); alkResult = alkForNSCLCByFISHTestOrderReportedSeparately.Result; } this.AddNextObxElement("ALK Rearrangement Analysis: " + alkResult, document, "F"); this.AddNextObxElement("", document, "F"); string ros1Result = null; if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true) { YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204); ros1Result = ros1ByFISHTestOrder.Result; } this.AddNextObxElement("ROS1 Rearrangement Analysis: " + ros1Result, document, "F"); this.AddNextObxElement("", document, "F"); this.AddNextObxElement("Pathologist: " + egfrToALKReflexAnalysisTestOrder.Signature, document, "F"); if (egfrToALKReflexAnalysisTestOrder.FinalTime.HasValue == true) { this.AddNextObxElement("E-signed " + egfrToALKReflexAnalysisTestOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F"); } this.AddNextObxElement("", document, "F"); this.AddAmendments(document); this.AddNextObxElement("Interpretation: ", document, "F"); this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Interpretation, document, "F"); this.AddNextObxElement("", document, "F"); this.AddNextObxElement("Method: ", document, "F"); this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Method, document, "F"); this.AddNextObxElement("", document, "F"); this.AddNextObxElement("References: ", document, "F"); this.HandleLongString(egfrToALKReflexAnalysisTestOrder.References, document, "F"); this.AddNextObxElement("", document, "F"); this.AddNextObxElement(egfrToALKReflexAnalysisTestOrder.GetLocationPerformedComment(), document, "F"); this.AddNextObxElement(string.Empty, document, "F"); }