createReactant() public method

public createReactant ( ) : SpeciesReference
return SpeciesReference
Esempio n. 1
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        protected override void Context()
        {
            base.Context();
            _sbmlModel       = new Model(3, 1);
            _sbmlInformation = new SBMLInformation();

            //one compartment reaction
            _reaction = _sbmlModel.createReaction();
            _reaction.setId("r1");

            //reaction partner
            var s1 = _sbmlModel.createSpecies();

            s1.setId("s1");
            s1.setCompartment("default");

            var s2 = _sbmlModel.createSpecies();

            s2.setId("s2");
            s2.setCompartment("default");

            var m  = new MoleculeInformation(s1);
            var m2 = new MoleculeInformation(s2);

            _sbmlInformation.MoleculeInformation.Add(m);
            _sbmlInformation.MoleculeInformation.Add(m2);

            //SRef
            var s1Ref = _reaction.createReactant();

            s1Ref.setSpecies("s1");
            s1Ref.setStoichiometry(1);

            var s2Ref = _reaction.createProduct();

            s2Ref.setSpecies("s2");
            s2Ref.setStoichiometry(2);
            _reaction.addProduct(s2Ref);

            //Modifier
            var mod = _reaction.createModifier();

            mod.setId("mod");
            mod.setName("mod");
            mod.setSpecies("s1");

            //Kinetic Law
            var kl = _reaction.createKineticLaw();

            kl.setId("kl");
            kl.setMath(libsbml.parseFormula("2*3"));
        }
 public void test_Reaction_createReactant()
 {
     Reaction m = new  Reaction(2,2);
       SpeciesReference p = m.createReactant();
       assertTrue( m.getNumReactants() == 1 );
       assertTrue( (p).getLevel() == 2 );
       assertTrue( (p).getVersion() == 2 );
       m = null;
 }
 public void test_SpeciesReference_Reactant_ancestor_create()
 {
     Reaction r = new Reaction(2,4);
       SpeciesReference sr = r.createReactant();
       ListOf lo = r.getListOfReactants();
       assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
       SpeciesReference obj = r.getReactant(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
 }
 public void test_SpeciesReference_Reactant_parent_create()
 {
     Reaction r = new Reaction(2,4);
       SpeciesReference sr = r.createReactant();
       ListOf lo = r.getListOfReactants();
       assertTrue( lo == r.getReactant(0).getParentSBMLObject() );
       assertTrue( lo == sr.getParentSBMLObject() );
       assertTrue( r == lo.getParentSBMLObject() );
 }
Esempio n. 5
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 public void test_Model_getSpeciesReferenceById()
 {
     Reaction r1 = new  Reaction(2,4);
       r1.setId( "r1");
       SpeciesReference sr = r1.createReactant();
       sr.setId( "s1");
       M.addReaction(r1);
       assertTrue( M.getNumReactions() == 1 );
       assertNotEquals(M.getSpeciesReference( "s1" ),sr);
 }