public void should_have_not_created_entries_for_property_parameter_of_the_enzyme()
{
var propertyParameters = _enzyme.AllParameters().Where(x => x.BuildMode == ParameterBuildMode.Property).ToList();
propertyParameters.Count.ShouldBeGreaterThan(0);
propertyParameters.Each(x =>
{
var parameterPath = _entityPathResolver.ObjectPathFor(x);
_psv[parameterPath].ShouldBeNull();
});
}
private void convertMolecule(IndividualMolecule moleculeToConvert, Individual individual)
{
//Complete reorganization of molecules in the new version. We need to update value of relative expression.
//We know that localization was already updated during xml conversion
var factory = _individualMoleculeFactoryResolver.FactoryFor(moleculeToConvert);
//Remove from individual so that we can add it again.
individual.RemoveMolecule(moleculeToConvert);
//New molecules is added. We need to update all global parameters as well as relative expression parameters
var newMolecule = factory.AddMoleculeTo(individual, moleculeToConvert.Name);
if (newMolecule == null)
{
return;
}
newMolecule.Ontogeny = moleculeToConvert.Ontogeny;
var allExpressionParameters = individual.AllExpressionParametersFor(newMolecule);
moleculeToConvert.GetAllChildren <MoleculeExpressionContainer>().Each(x => { convertParameter(x.RelativeExpressionParameter, allExpressionParameters[x.Name]); });
moleculeToConvert.AllParameters().Each(p => convertParameter(p, newMolecule.Parameter(p.Name)));
//Perform normalization
NormalizeRelativeExpressionCommand.NormalizeExpressions(individual, newMolecule);
//Do reset default value that may be set to 0
allExpressionParameters.Each(x => x.DefaultValue = null);
//molecule specific conversion
convertIndividualProtein(moleculeToConvert, newMolecule, individual);
convertIndividualTransporter(moleculeToConvert, newMolecule, individual);
}
private void resetMoleculeParametersToDefault(IndividualMolecule molecule)
{
molecule.AllParameters()
.Where(x => x.ValueDiffersFromDefault())
.Each(x => x.ResetToDefault());
}
