public JsonNetResult GetGraphVizJson(ExportGraphVizViewModel model)
{
IUserContext userContext = GetCurrentUser();
if (!(userContext.IsTaxonRevisionAdministrator() || userContext.IsTaxonEditor()))
{
return(new JsonNetResult("Access is not allowed"));
}
if (TaxonRelationsTreeCacheManager.CachedTaxonRelationTree == null)
{
return(new JsonNetResult("Dyntaxa Tree not yet created. Please try again in 1 minute."));
}
if (ModelState.IsValid)
{
var tree = TaxonRelationsTreeCacheManager.CachedTaxonRelationTree;
string graphviz = GraphvizManager.CreateGraphvizFormatRepresentation(
userContext,
tree,
tree.GetTreeNodes(model.GetTaxonIdsFromString()),
model.TreeIterationMode,
model.RelationTypeMode == TaxonRelationsTreeRelationTypeMode.OnlyValidRelations,
new GraphVizFormat()
{
ShowRelationId = model.ShowRelationId,
ShowLumpsAndSplits = model.IncludeLumpSplits
});
return(new JsonNetResult(graphviz));
}
return(new JsonNetResult("Unexpected error"));
}
public ActionResult Graphviz(ExportGraphVizViewModel model, string downloadTokenValue)
{
IUserContext userContext = GetCurrentUser();
if (!(userContext.IsTaxonRevisionAdministrator() || userContext.IsTaxonEditor()))
{
return(RedirectToAction("AccessIsNotAllowed", "Account", new { url = this.Request.Url }));
}
if (TaxonRelationsTreeCacheManager.CachedTaxonRelationTree == null)
{
ModelState.AddModelError("TreeError", "Dyntaxa Tree not yet created. Please try again in 1 minute.");
}
if (ModelState.IsValid)
{
var tree = TaxonRelationsTreeCacheManager.CachedTaxonRelationTree;
string graphviz = GraphvizManager.CreateGraphvizFormatRepresentation(
userContext,
tree,
tree.GetTreeNodes(model.GetTaxonIdsFromString()),
model.TreeIterationMode,
model.RelationTypeMode == TaxonRelationsTreeRelationTypeMode.OnlyValidRelations,
new GraphVizFormat()
{
ShowRelationId = model.ShowRelationId,
ShowLumpsAndSplits = model.IncludeLumpSplits
});
return(Content(graphviz));
}
// RowDelimiter Dropbox
var rowDelimiters = from MatchTaxonRowDelimiter rd in Enum.GetValues(typeof(MatchTaxonRowDelimiter))
select new { value = (int)rd, text = rd.GetLocalizedDescription() };
ViewData["RowDelimiter"] = new SelectList(rowDelimiters, "value", "text", model.RowDelimiter.ToString());
if (userContext.IsTaxonRevisionAdministrator() || userContext.IsTaxonEditor())
{
ViewBag.ShowRefreshDyntaxaTaxonTreeButton = true;
}
else
{
ViewBag.ShowRefreshDyntaxaTaxonTreeButton = false;
}
ViewBag.TreeLastUpdatedTime = TaxonRelationsTreeCacheManager.CacheLastUpdatedTime;
return(View(model));
}
public void CreateCompleteTaxonRelationsTree()
{
using (ShimsContext.Create())
{
LoginApplicationUserAndSetSessionVariables();
SetSwedishLanguage();
IUserContext userContext = ApplicationUserContextSV;
ITaxonSearchCriteria taxonSearchCriteria = new TaxonSearchCriteria();
var allTaxa = CoreData.TaxonManager.GetTaxa(userContext, taxonSearchCriteria);
TaxonRelationSearchCriteria searchCriteria = new TaxonRelationSearchCriteria();
var allRelations = CoreData.TaxonManager.GetTaxonRelations(userContext, searchCriteria);
var tree = TaxonRelationsTreeManager.CreateTaxonRelationsTree(userContext, allRelations, allTaxa, false);
//1012265
//1011617
//6001191 ensam
var edges = tree.GetAllChildAndParentEdges(266838);
string graphviz = GraphvizManager.CreateGraphvizFormatRepresentation(edges);
// find suspicious hybrids
List <ITaxonRelationsTreeNode> invalidHybrids;
// find root nodes
tree.RootNodes = new HashSet <ITaxonRelationsTreeNode>();
tree.ValidRootNodes = new HashSet <ITaxonRelationsTreeNode>();
foreach (var node in tree.AllTreeNodes)
{
tree.RootNodes.Add(node.RootNode);
if (node.RootNode.Taxon.IsValid)
{
tree.ValidRootNodes.Add(node.RootNode);
}
}
}
}
public void SplitGraphTest()
{
using (ShimsContext.Create())
{
//Arrange
LoginApplicationUserAndSetSessionVariables();
SetSwedishLanguage();
IUserContext userContext = ApplicationUserContextSV;
const int lumpSplitTaxonId = 2755;
//TaxonIdBefore: 233285
//TaxonIdAfter: 2755
ITaxonSearchCriteria taxonSearchCriteria = new TaxonSearchCriteria();
TaxonList allTaxa = CoreData.TaxonManager.GetTaxa(userContext, taxonSearchCriteria);
TaxonRelationSearchCriteria searchCriteria = new TaxonRelationSearchCriteria();
TaxonRelationList allRelations = CoreData.TaxonManager.GetTaxonRelations(userContext, searchCriteria);
TaxonRelationsTree tree = TaxonRelationsTreeManager.CreateTaxonRelationsTree(userContext, allRelations,
allTaxa, false);
var edges = tree.GetAllChildAndParentEdges(lumpSplitTaxonId);
var edges2 = tree.GetAllValidChildAndParentEdges(lumpSplitTaxonId);
List <ITaxonRelationsTreeNode> sourceNodes = new List <ITaxonRelationsTreeNode> {
tree.GetTreeNode(lumpSplitTaxonId)
};
GraphVizFormat graphVizFormat = new GraphVizFormat()
{
ShowLumpsAndSplits = true,
ShowRelationId = false
};
string graphRepresentation2 = GraphvizManager.CreateGraphvizFormatRepresentation(
userContext,
tree,
edges2,
sourceNodes,
graphVizFormat);
int x = 8;
}
}
