Ejemplo n.º 1
0
        public JsonNetResult GetGraphVizJson(ExportGraphVizViewModel model)
        {
            IUserContext userContext = GetCurrentUser();

            if (!(userContext.IsTaxonRevisionAdministrator() || userContext.IsTaxonEditor()))
            {
                return(new JsonNetResult("Access is not allowed"));
            }

            if (TaxonRelationsTreeCacheManager.CachedTaxonRelationTree == null)
            {
                return(new JsonNetResult("Dyntaxa Tree not yet created. Please try again in 1 minute."));
            }

            if (ModelState.IsValid)
            {
                var tree = TaxonRelationsTreeCacheManager.CachedTaxonRelationTree;

                string graphviz = GraphvizManager.CreateGraphvizFormatRepresentation(
                    userContext,
                    tree,
                    tree.GetTreeNodes(model.GetTaxonIdsFromString()),
                    model.TreeIterationMode,
                    model.RelationTypeMode == TaxonRelationsTreeRelationTypeMode.OnlyValidRelations,
                    new GraphVizFormat()
                {
                    ShowRelationId     = model.ShowRelationId,
                    ShowLumpsAndSplits = model.IncludeLumpSplits
                });

                return(new JsonNetResult(graphviz));
            }

            return(new JsonNetResult("Unexpected error"));
        }
Ejemplo n.º 2
0
        public ActionResult Graphviz(ExportGraphVizViewModel model, string downloadTokenValue)
        {
            IUserContext userContext = GetCurrentUser();

            if (!(userContext.IsTaxonRevisionAdministrator() || userContext.IsTaxonEditor()))
            {
                return(RedirectToAction("AccessIsNotAllowed", "Account", new { url = this.Request.Url }));
            }

            if (TaxonRelationsTreeCacheManager.CachedTaxonRelationTree == null)
            {
                ModelState.AddModelError("TreeError", "Dyntaxa Tree not yet created. Please try again in 1 minute.");
            }

            if (ModelState.IsValid)
            {
                var tree = TaxonRelationsTreeCacheManager.CachedTaxonRelationTree;

                string graphviz = GraphvizManager.CreateGraphvizFormatRepresentation(
                    userContext,
                    tree,
                    tree.GetTreeNodes(model.GetTaxonIdsFromString()),
                    model.TreeIterationMode,
                    model.RelationTypeMode == TaxonRelationsTreeRelationTypeMode.OnlyValidRelations,
                    new GraphVizFormat()
                {
                    ShowRelationId     = model.ShowRelationId,
                    ShowLumpsAndSplits = model.IncludeLumpSplits
                });
                return(Content(graphviz));
            }

            // RowDelimiter Dropbox
            var rowDelimiters = from MatchTaxonRowDelimiter rd in Enum.GetValues(typeof(MatchTaxonRowDelimiter))
                                select new { value = (int)rd, text = rd.GetLocalizedDescription() };

            ViewData["RowDelimiter"] = new SelectList(rowDelimiters, "value", "text", model.RowDelimiter.ToString());

            if (userContext.IsTaxonRevisionAdministrator() || userContext.IsTaxonEditor())
            {
                ViewBag.ShowRefreshDyntaxaTaxonTreeButton = true;
            }
            else
            {
                ViewBag.ShowRefreshDyntaxaTaxonTreeButton = false;
            }
            ViewBag.TreeLastUpdatedTime = TaxonRelationsTreeCacheManager.CacheLastUpdatedTime;

            return(View(model));
        }
        public void CreateCompleteTaxonRelationsTree()
        {
            using (ShimsContext.Create())
            {
                LoginApplicationUserAndSetSessionVariables();
                SetSwedishLanguage();
                IUserContext userContext = ApplicationUserContextSV;

                ITaxonSearchCriteria taxonSearchCriteria = new TaxonSearchCriteria();
                var allTaxa = CoreData.TaxonManager.GetTaxa(userContext, taxonSearchCriteria);

                TaxonRelationSearchCriteria searchCriteria = new TaxonRelationSearchCriteria();
                var allRelations = CoreData.TaxonManager.GetTaxonRelations(userContext, searchCriteria);

                var tree = TaxonRelationsTreeManager.CreateTaxonRelationsTree(userContext, allRelations, allTaxa, false);

                //1012265
                //1011617
                //6001191 ensam
                var    edges    = tree.GetAllChildAndParentEdges(266838);
                string graphviz = GraphvizManager.CreateGraphvizFormatRepresentation(edges);

                // find suspicious hybrids
                List <ITaxonRelationsTreeNode> invalidHybrids;


                // find root nodes
                tree.RootNodes      = new HashSet <ITaxonRelationsTreeNode>();
                tree.ValidRootNodes = new HashSet <ITaxonRelationsTreeNode>();
                foreach (var node in tree.AllTreeNodes)
                {
                    tree.RootNodes.Add(node.RootNode);

                    if (node.RootNode.Taxon.IsValid)
                    {
                        tree.ValidRootNodes.Add(node.RootNode);
                    }
                }
            }
        }
        public void SplitGraphTest()
        {
            using (ShimsContext.Create())
            {
                //Arrange
                LoginApplicationUserAndSetSessionVariables();
                SetSwedishLanguage();
                IUserContext userContext      = ApplicationUserContextSV;
                const int    lumpSplitTaxonId = 2755;
                //TaxonIdBefore: 233285
                //TaxonIdAfter: 2755

                ITaxonSearchCriteria taxonSearchCriteria = new TaxonSearchCriteria();
                TaxonList            allTaxa             = CoreData.TaxonManager.GetTaxa(userContext, taxonSearchCriteria);

                TaxonRelationSearchCriteria searchCriteria = new TaxonRelationSearchCriteria();
                TaxonRelationList           allRelations   = CoreData.TaxonManager.GetTaxonRelations(userContext, searchCriteria);
                TaxonRelationsTree          tree           = TaxonRelationsTreeManager.CreateTaxonRelationsTree(userContext, allRelations,
                                                                                                                allTaxa, false);

                var edges  = tree.GetAllChildAndParentEdges(lumpSplitTaxonId);
                var edges2 = tree.GetAllValidChildAndParentEdges(lumpSplitTaxonId);
                List <ITaxonRelationsTreeNode> sourceNodes = new List <ITaxonRelationsTreeNode> {
                    tree.GetTreeNode(lumpSplitTaxonId)
                };
                GraphVizFormat graphVizFormat = new GraphVizFormat()
                {
                    ShowLumpsAndSplits = true,
                    ShowRelationId     = false
                };

                string graphRepresentation2 = GraphvizManager.CreateGraphvizFormatRepresentation(
                    userContext,
                    tree,
                    edges2,
                    sourceNodes,
                    graphVizFormat);
                int x = 8;
            }
        }