| public getFunctionDefinition ( long n ) : FunctionDefinition | ||
| n | long | |
| return | FunctionDefinition | |
public void test_FunctionDefinition_parent_create()
{
Model m = new Model(2,4);
FunctionDefinition fd = m.createFunctionDefinition();
ListOf lo = m.getListOfFunctionDefinitions();
assertTrue( lo == m.getFunctionDefinition(0).getParentSBMLObject() );
assertTrue( lo == fd.getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
/// <summary>
/// [ FunctionDefinitionStruct ]
/// [[ Id , Name , String ]]
/// <param name="aSBMLmodel"></param>
/// </summary>
public static List<FunctionDefinitionStruct> getFunctionDefinition(Model aSBMLmodel)
{
List<FunctionDefinitionStruct> list = new List<FunctionDefinitionStruct>();
ListOfFunctionDefinitions functionDefinitions = aSBMLmodel.getListOfFunctionDefinitions();
for (int i = 0; i < functionDefinitions.size(); i++ )
{
FunctionDefinition aFunctionDefinition = aSBMLmodel.getFunctionDefinition(i);
string anId_FD = aFunctionDefinition.getId();
string aName_FD = aFunctionDefinition.getName();
ASTNode anASTNode_FD = aFunctionDefinition.getMath();
string aString_FD = libsbml.libsbml.formulaToString(anASTNode_FD );
FunctionDefinitionStruct fd = new FunctionDefinitionStruct(
anId_FD,
aName_FD,
aString_FD);
list.Add(fd);
}
return list;
}
public void test_FunctionDefinition_parent_add()
{
FunctionDefinition fd = new FunctionDefinition(2,4);
Model m = new Model(2,4);
fd.setId("fd");
fd.setMath(libsbml.parseFormula("l"));
m.addFunctionDefinition(fd);
fd = null;
ListOf lo = m.getListOfFunctionDefinitions();
assertTrue( lo == m.getFunctionDefinition(0).getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_FunctionDefinition_ancestor_create()
{
Model m = new Model(2,4);
FunctionDefinition fd = m.createFunctionDefinition();
ListOf lo = m.getListOfFunctionDefinitions();
assertTrue( fd.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( fd.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( fd.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( fd.getAncestorOfType(libsbml.SBML_EVENT) == null );
FunctionDefinition obj = m.getFunctionDefinition(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
}
public void test_FunctionDefinition_ancestor_add()
{
FunctionDefinition fd = new FunctionDefinition(2,4);
Model m = new Model(2,4);
fd.setId("fd");
fd.setMath(libsbml.parseFormula("l"));
m.addFunctionDefinition(fd);
fd = null;
ListOf lo = m.getListOfFunctionDefinitions();
FunctionDefinition obj = m.getFunctionDefinition(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
}
public void test_ReadSBML_metaid()
{
SBase sb;
string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" +
" <functionDefinition metaid='fd'/>" +
"</listOfFunctionDefinitions>" +
"<listOfUnitDefinitions>" +
" <unitDefinition metaid='ud'/>" +
"</listOfUnitDefinitions>" +
"<listOfCompartments>" +
" <compartment metaid='c'/>" +
"</listOfCompartments>" +
"<listOfSpecies>" +
" <species metaid='s'/>" +
"</listOfSpecies>" +
"<listOfParameters>" +
" <parameter metaid='p'/>" +
"</listOfParameters>" +
"<listOfRules>" +
" <rateRule metaid='rr'/>" +
"</listOfRules>" +
"<listOfReactions>" +
" <reaction metaid='rx'/>" +
"</listOfReactions>" +
"<listOfEvents>" +
" <event metaid='e'/>" +
"</listOfEvents>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M != null );
sb = M.getFunctionDefinition(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "fd" == sb.getMetaId() ));
sb = M.getUnitDefinition(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "ud" == sb.getMetaId() ));
sb = M.getCompartment(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "c" == sb.getMetaId() ));
sb = M.getSpecies(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "s" == sb.getMetaId() ));
sb = M.getParameter(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "p" == sb.getMetaId() ));
sb = M.getRule(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "rr" == sb.getMetaId() ));
sb = M.getReaction(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "rx" == sb.getMetaId() ));
sb = M.getEvent(0);
assertEquals( true, sb.isSetMetaId() );
assertTrue(( "e" == sb.getMetaId() ));
}
public void test_ReadSBML_FunctionDefinition()
{
FunctionDefinition fd;
ASTNode math;
string formula;
string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" +
" <functionDefinition id='pow3' name='cubed'>" +
" <math>" +
" <lambda>" +
" <bvar><ci> x </ci></bvar>" +
" <apply>" +
" <power/>" +
" <ci> x </ci>" +
" <cn> 3 </cn>" +
" </apply>" +
" </lambda>" +
" </math>" +
" </functionDefinition>" +
"</listOfFunctionDefinitions>");
D = libsbml.readSBMLFromString(s);
M = D.getModel();
assertTrue( M.getNumFunctionDefinitions() == 1 );
fd = M.getFunctionDefinition(0);
assertTrue( fd != null );
assertEquals( true, fd.isSetId() );
assertEquals( true, fd.isSetName() );
assertTrue(( "pow3" == fd.getId() ));
assertTrue(( "cubed" == fd.getName() ));
assertEquals( true, fd.isSetMath() );
math = fd.getMath();
formula = libsbml.formulaToString(math);
assertTrue( formula != null );
assertTrue(( "lambda(x, pow(x, 3))" == formula ));
}
