createProduct() public method

public createProduct ( ) : SpeciesReference
return SpeciesReference
Ejemplo n.º 1
0
 public void test_create_l1v1_units()
 {
     SBMLDocument d;
       Model m;
       Compartment c;
       KineticLaw kl;
       Parameter p;
       Reaction r;
       Species s;
       SpeciesReference sr;
       Unit u;
       UnitDefinition ud;
       d = new  SBMLDocument();
       m = new  Model(2,4);
       d.setModel(m);
       ud = m.createUnitDefinition();
       ud.setName( "substance");
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_MOLE);
       u.setScale(-3);
       ud = m.createUnitDefinition();
       ud.setName( "mls");
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_MOLE);
       u.setScale(-3);
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_LITER);
       u.setExponent(-1);
       u = m.createUnit();
       u.setKind(libsbml.UNIT_KIND_SECOND);
       u.setExponent(-1);
       c = m.createCompartment();
       c.setName( "cell");
       s = m.createSpecies();
       s.setName( "x0");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       s = m.createSpecies();
       s.setName( "x1");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       s = m.createSpecies();
       s.setName( "s1");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       s = m.createSpecies();
       s.setName( "s2");
       s.setCompartment( "cell");
       s.setInitialAmount(1);
       p = m.createParameter();
       p.setName( "vm");
       p.setUnits( "mls");
       p.setValue(2);
       p = m.createParameter();
       p.setName( "km");
       p.setValue(2);
       r = m.createReaction();
       r.setName( "v1");
       sr = m.createReactant();
       sr.setSpecies( "x0");
       sr = m.createProduct();
       sr.setSpecies( "s1");
       kl = m.createKineticLaw();
       kl.setFormula( "(vm * s1)/(km + s1)");
       r = m.createReaction();
       r.setName( "v2");
       sr = m.createReactant();
       sr.setSpecies( "s1");
       sr = m.createProduct();
       sr.setSpecies( "s2");
       kl = m.createKineticLaw();
       kl.setFormula( "(vm * s2)/(km + s2)");
       r = m.createReaction();
       r.setName( "v3");
       sr = m.createReactant();
       sr.setSpecies( "s2");
       sr = m.createProduct();
       sr.setSpecies( "x1");
       kl = m.createKineticLaw();
       kl.setFormula( "(vm * s1)/(km + s1)");
       d = null;
 }
Ejemplo n.º 2
0
 public void test_SpeciesReference_Product_ancestor_create_model()
 {
     Model m = new Model(2,4);
       Reaction r = m.createReaction();
       SpeciesReference sr = m.createProduct();
       ListOf lo = r.getListOfProducts();
       assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
       SpeciesReference obj = r.getProduct(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
 }
 public void test_SpeciesReference_Product_parent_create_model()
 {
     Model m = new Model(2,4);
       Reaction r = m.createReaction();
       SpeciesReference sr = m.createProduct();
       ListOf lo = r.getListOfProducts();
       assertTrue( lo == r.getProduct(0).getParentSBMLObject() );
       assertTrue( lo == sr.getParentSBMLObject() );
       assertTrue( r == lo.getParentSBMLObject() );
 }
Ejemplo n.º 4
0
 public void test_Model_createProduct()
 {
     Model m = new  Model(2,2);
       Reaction p = m.createReaction();
       SpeciesReference sr = m.createProduct();
       assertTrue( p.getNumProducts() == 1 );
       assertTrue( (sr).getLevel() == 2 );
       assertTrue( (sr).getVersion() == 2 );
       m = null;
 }