public void ConvertIlluminaToSangerAndSolexa()
{
// Gets the actual sequence and the Qual score from the Xml
string illuminaSequence = utilityObj.xmlUtil.GetTextValue(
Constants.IlluminaToSangerAndSolexaNode, Constants.IlluminaSequence);
string illuminaQualScore = utilityObj.xmlUtil.GetTextValue(
Constants.IlluminaToSangerAndSolexaNode, Constants.IlluminaQualScore);
string expectedSangerQualScore = utilityObj.xmlUtil.GetTextValue(
Constants.IlluminaToSangerAndSolexaNode, Constants.SangerQualScore);
string expectedSolexaQualScore = utilityObj.xmlUtil.GetTextValue(
Constants.IlluminaToSangerAndSolexaNode, Constants.SolexaQualScore);
byte[] illuminaSequenceinBytes = UTF8Encoding.UTF8.GetBytes(illuminaSequence);
byte[] illuminaQualScoreinBytes = UTF8Encoding.UTF8.GetBytes(illuminaQualScore);
byte[] sangerQualScore = QualitativeSequence.ConvertFromIlluminaToSanger(illuminaQualScoreinBytes);
string qualSequenceSanger = new string(UTF8Encoding.UTF8.GetChars(sangerQualScore));
// Validate converted sanger score.
Assert.AreEqual(expectedSangerQualScore, qualSequenceSanger);
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"Qualitative Sequence BVT:Qualitative Sanger score type {0} is as expected.",
sangerQualScore));
byte[] solexaQualScore = QualitativeSequence.ConvertFromIlluminaToSolexa(illuminaQualScoreinBytes);
string qualSequenceSolexa = new string(UTF8Encoding.UTF8.GetChars(solexaQualScore));
// Validate converted illumina score.
Assert.AreEqual(expectedSolexaQualScore, qualSequenceSolexa);
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"Qualitative Sequence BVT:Qualitative Solexa format type {0} is as expected.",
illuminaQualScore));
}
public void TestConvertFromIlluminaToSanger()
{
byte[] bs;
byte[] bs1 = new byte[2];
bs1[0] = (byte)64;
bs1[1] = (byte)64;
bs = QualitativeSequence.ConvertFromIlluminaToSanger(bs1);
Assert.IsNotNull((object)bs);
Assert.AreEqual <int>(2, bs.Length);
Assert.AreEqual <byte>((byte)33, bs[0]);
Assert.AreEqual <byte>((byte)33, bs[1]);
}
public void TestConvertFromIlluminaToSanger()
{
byte[] sangerScores;
byte[] illuminaScores = new byte[2];
illuminaScores[0] = (byte)64;
illuminaScores[1] = (byte)64;
sangerScores = QualitativeSequence.ConvertFromIlluminaToSanger(illuminaScores);
Assert.IsNotNull((object)sangerScores);
Assert.AreEqual <int>(2, sangerScores.Length);
Assert.AreEqual <byte>((byte)33, sangerScores[0]);
Assert.AreEqual <byte>((byte)33, sangerScores[1]);
}
