public void TestEditingWhenIsReadOnlyIsTrue()
{
QualitativeSequence qualSequence = new QualitativeSequence(Alphabets.RNA, FastQFormatType.Illumina, "ACUGGA", 65);
Assert.IsTrue(qualSequence.IsReadOnly);
try
{
qualSequence.Clear();
Assert.Fail();
}
catch
{
Assert.AreEqual(qualSequence.Count, 6);
}
try
{
qualSequence.Add(Alphabets.RNA.AC);
Assert.Fail();
}
catch
{
Assert.AreEqual(qualSequence.Count, 6);
}
try
{
qualSequence.Remove(Alphabets.RNA.AC);
Assert.Fail();
}
catch
{
Assert.AreEqual(qualSequence.Count, 6);
}
try
{
qualSequence.Replace(0, Alphabets.RNA.AC.Symbol);
Assert.Fail();
}
catch
{
Assert.AreEqual(qualSequence.Count, 6);
}
}
public void TestEditingwhenIsReadOnlyIsFalse()
{
QualitativeSequence qualSequence = new QualitativeSequence(Alphabets.RNA, FastQFormatType.Illumina, "ACUGGA", 65);
Assert.IsTrue(qualSequence.IsReadOnly);
qualSequence.IsReadOnly = false;
Assert.AreEqual(qualSequence.Count, 6);
Assert.AreEqual(qualSequence.ToString(), "ACUGGA");
qualSequence.Clear();
Assert.AreEqual(qualSequence.Count, 0);
Assert.AreEqual(qualSequence.Scores.Length, 0);
qualSequence.Add(Alphabets.RNA.A, 65);
Assert.AreEqual(qualSequence.Count, 1);
Assert.AreEqual(qualSequence.Scores.Length, 1);
Assert.AreSame(qualSequence[0], Alphabets.RNA.A);
Assert.AreEqual(qualSequence.Scores[0], 65);
qualSequence.Insert(0, Alphabets.RNA.G, 70);
Assert.AreEqual(qualSequence.Count, 2);
Assert.AreEqual(qualSequence.Scores.Length, 2);
Assert.AreSame(qualSequence[0], Alphabets.RNA.G);
Assert.AreSame(qualSequence[1], Alphabets.RNA.A);
Assert.AreEqual(qualSequence.Scores[0], 70);
Assert.AreEqual(qualSequence.Scores[1], 65);
qualSequence.Replace(0, Alphabets.RNA.U, 75);
Assert.AreEqual(qualSequence.Count, 2);
Assert.AreEqual(qualSequence.Scores.Length, 2);
Assert.AreSame(qualSequence[0], Alphabets.RNA.U);
Assert.AreSame(qualSequence[1], Alphabets.RNA.A);
Assert.AreEqual(qualSequence.Scores[0], 75);
Assert.AreEqual(qualSequence.Scores[1], 65);
qualSequence.Remove(Alphabets.RNA.C);
Assert.AreEqual(qualSequence.Count, 2);
Assert.AreEqual(qualSequence.Scores.Length, 2);
Assert.AreSame(qualSequence[0], Alphabets.RNA.U);
Assert.AreSame(qualSequence[1], Alphabets.RNA.A);
Assert.AreEqual(qualSequence.Scores[0], 75);
Assert.AreEqual(qualSequence.Scores[1], 65);
qualSequence.Remove(Alphabets.RNA.A);
Assert.AreEqual(qualSequence.Count, 1);
Assert.AreEqual(qualSequence.Scores.Length, 1);
Assert.AreSame(qualSequence[0], Alphabets.RNA.U);
Assert.AreEqual(qualSequence.Scores[0], 75);
qualSequence.Add(Alphabets.RNA.A, 65);
Assert.AreEqual(qualSequence.Count, 2);
Assert.AreEqual(qualSequence.Scores.Length, 2);
Assert.AreSame(qualSequence[0], Alphabets.RNA.U);
Assert.AreSame(qualSequence[1], Alphabets.RNA.A);
Assert.AreEqual(qualSequence.Scores[0], 75);
Assert.AreEqual(qualSequence.Scores[1], 65);
qualSequence.RemoveAt(1);
Assert.AreEqual(qualSequence.Count, 1);
Assert.AreEqual(qualSequence.Scores.Length, 1);
}
