public SWIGTYPE_p_float FloatArray(int n, float val)
{
var arr = new FloatArray(n);
for (int i = 0; i < n; i++)
{
arr.setitem(i, val);
}
return(arr.cast());
}
public void EdnaScorer()
{
var eval = new EdnaEvaluator(EdnaFeatures(), "ACGTACGT", ChannelArray().cast(), ModelParams());
var recursor = new SparseSseEdnaRecursor((int) Move.ALL_MOVES, new BandingOptions(0, 10));
var scorer = new SparseSseEdnaMutationScorer(eval, recursor);
scorer.ScoreMutation(MutationType.INSERTION, 3, 'A');
var counter = new EdnaCounts();
var intFeature = new IntFeature(10);
var resultArray = new FloatArray(5);
counter.DoCount(intFeature, eval, scorer, 3,4, resultArray.cast());
}
public void EdnaScorer()
{
var eval = new EdnaEvaluator(EdnaFeatures(), "ACGTACGT", ChannelArray().cast(), ModelParams());
var recursor = new SparseSseEdnaRecursor((int)Move.ALL_MOVES, new BandingOptions(0, 10));
var scorer = new SparseSseEdnaMutationScorer(eval, recursor);
scorer.ScoreMutation(MutationType.INSERTION, 3, 'A');
var counter = new EdnaCounts();
var intFeature = new IntFeature(10);
var resultArray = new FloatArray(5);
counter.DoCount(intFeature, eval, scorer, 3, 4, resultArray.cast());
}
public SWIGTYPE_p_float FloatArray(int n, float val)
{
var arr = new FloatArray(n);
for(int i = 0; i < n; i++)
arr.setitem(i, val);
return arr.cast();
}
private static void serializeIjkGrid(DataObjectRepository repo)
{
AbstractIjkGridRepresentation ijkGrid = repo.createPartialIjkGridRepresentation("", "partial IJK Grid");
f2i.energisticsStandardsApi.common.PropertyKind propertyKind = repo.createPartialPropertyKind("", "Partial prop kind");
// creating the continuous Property with computing min max
ContinuousProperty propertyCompute = repo.createContinuousProperty(
ijkGrid, "9d0a717f-2cd3-4d43-9cbf-3484105ed384", "slab prop compute min max",
1,
resqml20__IndexableElements.resqml20__IndexableElements__cells,
resqml20__ResqmlUom.resqml20__ResqmlUom__m,
propertyKind);
propertyCompute.pushBackFloatHdf5Array3dOfValues(2, 3, 4);
ulong valueCountInFastestDim = 2;
ulong valueCountInMiddleDim = 3;
ulong valueCountInSlowestDim = 1;
ulong offsetInFastestDim = 0;
ulong offsetInMiddleDim = 0;
ulong offsetInSlowestDim = 0;
FloatArray kLayerValues = new FloatArray(6);
kLayerValues.setitem(0, -123.0f);
kLayerValues.setitem(1, .01f);
kLayerValues.setitem(2, .02f);
kLayerValues.setitem(3, .03f);
kLayerValues.setitem(4, .04f);
kLayerValues.setitem(5, .05f);
propertyCompute.setValuesOfFloatHdf5Array3dOfValues(kLayerValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim,
offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim);
kLayerValues.setitem(0, .10f);
kLayerValues.setitem(1, .11f);
kLayerValues.setitem(2, .12f);
kLayerValues.setitem(3, .13f);
kLayerValues.setitem(4, .14f);
kLayerValues.setitem(5, .15f);
++offsetInSlowestDim;
propertyCompute.setValuesOfFloatHdf5Array3dOfValues(kLayerValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim,
offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim);
kLayerValues.setitem(0, .20f);
kLayerValues.setitem(1, .21f);
kLayerValues.setitem(2, .22f);
kLayerValues.setitem(3, float.NaN);
kLayerValues.setitem(4, .24f);
kLayerValues.setitem(5, .25f);
++offsetInSlowestDim;
propertyCompute.setValuesOfFloatHdf5Array3dOfValues(kLayerValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim,
offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim);
kLayerValues.setitem(0, .30f);
kLayerValues.setitem(1, .31f);
kLayerValues.setitem(2, .32f);
kLayerValues.setitem(3, .33f);
kLayerValues.setitem(4, .34f);
kLayerValues.setitem(5, .35f);
++offsetInSlowestDim;
propertyCompute.setValuesOfFloatHdf5Array3dOfValues(kLayerValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim,
offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim);
GC.KeepAlive(kLayerValues);
// creating the discrete Property with computing min max
DiscreteProperty discretePropertyCompute = repo.createDiscreteProperty(
ijkGrid, "50935c31-93ec-4084-8891-6e9f130c49c3", "testing discrete prop",
1,
resqml20__IndexableElements.resqml20__IndexableElements__cells,
resqml20__ResqmlPropertyKind.resqml20__ResqmlPropertyKind__index);
discretePropertyCompute.pushBackLongHdf5Array3dOfValues(2, 3, 4, 9999);
offsetInSlowestDim = 0;
LongArray kLayerlongValues = new LongArray(6);
kLayerlongValues.setitem(0, -10);
kLayerlongValues.setitem(1, 1);
kLayerlongValues.setitem(2, 2);
kLayerlongValues.setitem(3, 3);
kLayerlongValues.setitem(4, 4);
kLayerlongValues.setitem(5, 5);
discretePropertyCompute.setValuesOfLongHdf5Array3dOfValues(kLayerlongValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim,
offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim);
kLayerlongValues.setitem(0, 10);
kLayerlongValues.setitem(1, 11);
kLayerlongValues.setitem(2, 12);
kLayerlongValues.setitem(3, 13);
kLayerlongValues.setitem(4, 14);
kLayerlongValues.setitem(5, 15);
++offsetInSlowestDim;
discretePropertyCompute.setValuesOfLongHdf5Array3dOfValues(kLayerlongValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim,
offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim);
kLayerlongValues.setitem(0, 20);
kLayerlongValues.setitem(1, 21);
kLayerlongValues.setitem(2, 22);
kLayerlongValues.setitem(3, 9999);
kLayerlongValues.setitem(4, 24);
kLayerlongValues.setitem(5, 25);
++offsetInSlowestDim;
discretePropertyCompute.setValuesOfLongHdf5Array3dOfValues(kLayerlongValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim,
offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim);
kLayerlongValues.setitem(0, 30);
kLayerlongValues.setitem(1, 31);
kLayerlongValues.setitem(2, 32);
kLayerlongValues.setitem(3, 33);
kLayerlongValues.setitem(4, 34);
kLayerlongValues.setitem(5, 35);
++offsetInSlowestDim;
discretePropertyCompute.setValuesOfLongHdf5Array3dOfValues(kLayerlongValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim,
offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim);
GC.KeepAlive(kLayerlongValues);
}
