public SWIGTYPE_p_float FloatArray(int n, float val) { var arr = new FloatArray(n); for (int i = 0; i < n; i++) { arr.setitem(i, val); } return(arr.cast()); }
public void EdnaScorer() { var eval = new EdnaEvaluator(EdnaFeatures(), "ACGTACGT", ChannelArray().cast(), ModelParams()); var recursor = new SparseSseEdnaRecursor((int) Move.ALL_MOVES, new BandingOptions(0, 10)); var scorer = new SparseSseEdnaMutationScorer(eval, recursor); scorer.ScoreMutation(MutationType.INSERTION, 3, 'A'); var counter = new EdnaCounts(); var intFeature = new IntFeature(10); var resultArray = new FloatArray(5); counter.DoCount(intFeature, eval, scorer, 3,4, resultArray.cast()); }
public void EdnaScorer() { var eval = new EdnaEvaluator(EdnaFeatures(), "ACGTACGT", ChannelArray().cast(), ModelParams()); var recursor = new SparseSseEdnaRecursor((int)Move.ALL_MOVES, new BandingOptions(0, 10)); var scorer = new SparseSseEdnaMutationScorer(eval, recursor); scorer.ScoreMutation(MutationType.INSERTION, 3, 'A'); var counter = new EdnaCounts(); var intFeature = new IntFeature(10); var resultArray = new FloatArray(5); counter.DoCount(intFeature, eval, scorer, 3, 4, resultArray.cast()); }
public SWIGTYPE_p_float FloatArray(int n, float val) { var arr = new FloatArray(n); for(int i = 0; i < n; i++) arr.setitem(i, val); return arr.cast(); }
private static void serializeIjkGrid(DataObjectRepository repo) { AbstractIjkGridRepresentation ijkGrid = repo.createPartialIjkGridRepresentation("", "partial IJK Grid"); f2i.energisticsStandardsApi.common.PropertyKind propertyKind = repo.createPartialPropertyKind("", "Partial prop kind"); // creating the continuous Property with computing min max ContinuousProperty propertyCompute = repo.createContinuousProperty( ijkGrid, "9d0a717f-2cd3-4d43-9cbf-3484105ed384", "slab prop compute min max", 1, resqml20__IndexableElements.resqml20__IndexableElements__cells, resqml20__ResqmlUom.resqml20__ResqmlUom__m, propertyKind); propertyCompute.pushBackFloatHdf5Array3dOfValues(2, 3, 4); ulong valueCountInFastestDim = 2; ulong valueCountInMiddleDim = 3; ulong valueCountInSlowestDim = 1; ulong offsetInFastestDim = 0; ulong offsetInMiddleDim = 0; ulong offsetInSlowestDim = 0; FloatArray kLayerValues = new FloatArray(6); kLayerValues.setitem(0, -123.0f); kLayerValues.setitem(1, .01f); kLayerValues.setitem(2, .02f); kLayerValues.setitem(3, .03f); kLayerValues.setitem(4, .04f); kLayerValues.setitem(5, .05f); propertyCompute.setValuesOfFloatHdf5Array3dOfValues(kLayerValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim, offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim); kLayerValues.setitem(0, .10f); kLayerValues.setitem(1, .11f); kLayerValues.setitem(2, .12f); kLayerValues.setitem(3, .13f); kLayerValues.setitem(4, .14f); kLayerValues.setitem(5, .15f); ++offsetInSlowestDim; propertyCompute.setValuesOfFloatHdf5Array3dOfValues(kLayerValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim, offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim); kLayerValues.setitem(0, .20f); kLayerValues.setitem(1, .21f); kLayerValues.setitem(2, .22f); kLayerValues.setitem(3, float.NaN); kLayerValues.setitem(4, .24f); kLayerValues.setitem(5, .25f); ++offsetInSlowestDim; propertyCompute.setValuesOfFloatHdf5Array3dOfValues(kLayerValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim, offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim); kLayerValues.setitem(0, .30f); kLayerValues.setitem(1, .31f); kLayerValues.setitem(2, .32f); kLayerValues.setitem(3, .33f); kLayerValues.setitem(4, .34f); kLayerValues.setitem(5, .35f); ++offsetInSlowestDim; propertyCompute.setValuesOfFloatHdf5Array3dOfValues(kLayerValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim, offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim); GC.KeepAlive(kLayerValues); // creating the discrete Property with computing min max DiscreteProperty discretePropertyCompute = repo.createDiscreteProperty( ijkGrid, "50935c31-93ec-4084-8891-6e9f130c49c3", "testing discrete prop", 1, resqml20__IndexableElements.resqml20__IndexableElements__cells, resqml20__ResqmlPropertyKind.resqml20__ResqmlPropertyKind__index); discretePropertyCompute.pushBackLongHdf5Array3dOfValues(2, 3, 4, 9999); offsetInSlowestDim = 0; LongArray kLayerlongValues = new LongArray(6); kLayerlongValues.setitem(0, -10); kLayerlongValues.setitem(1, 1); kLayerlongValues.setitem(2, 2); kLayerlongValues.setitem(3, 3); kLayerlongValues.setitem(4, 4); kLayerlongValues.setitem(5, 5); discretePropertyCompute.setValuesOfLongHdf5Array3dOfValues(kLayerlongValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim, offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim); kLayerlongValues.setitem(0, 10); kLayerlongValues.setitem(1, 11); kLayerlongValues.setitem(2, 12); kLayerlongValues.setitem(3, 13); kLayerlongValues.setitem(4, 14); kLayerlongValues.setitem(5, 15); ++offsetInSlowestDim; discretePropertyCompute.setValuesOfLongHdf5Array3dOfValues(kLayerlongValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim, offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim); kLayerlongValues.setitem(0, 20); kLayerlongValues.setitem(1, 21); kLayerlongValues.setitem(2, 22); kLayerlongValues.setitem(3, 9999); kLayerlongValues.setitem(4, 24); kLayerlongValues.setitem(5, 25); ++offsetInSlowestDim; discretePropertyCompute.setValuesOfLongHdf5Array3dOfValues(kLayerlongValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim, offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim); kLayerlongValues.setitem(0, 30); kLayerlongValues.setitem(1, 31); kLayerlongValues.setitem(2, 32); kLayerlongValues.setitem(3, 33); kLayerlongValues.setitem(4, 34); kLayerlongValues.setitem(5, 35); ++offsetInSlowestDim; discretePropertyCompute.setValuesOfLongHdf5Array3dOfValues(kLayerlongValues.cast(), valueCountInFastestDim, valueCountInMiddleDim, valueCountInSlowestDim, offsetInFastestDim, offsetInMiddleDim, offsetInSlowestDim); GC.KeepAlive(kLayerlongValues); }