public void setUp()
{
NS = new XMLNamespaces();
if (NS == null);
{
}
}
public void test_SpeciesReference_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
SpeciesReference object1 = new SpeciesReference(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
public void test_Parameter_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
Parameter object1 = new Parameter(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_PARAMETER );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
public void test_EventAssignment_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
EventAssignment object1 = new EventAssignment(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
public void test_StoichiometryMath_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
StoichiometryMath object1 = new StoichiometryMath(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_STOICHIOMETRY_MATH );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
public void test_RateRule_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
Rule object1 = new RateRule(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_RATE_RULE );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
public void test_CompartmentType_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,2);
sbmlns.addNamespaces(xmlns);
CompartmentType object1 = new CompartmentType(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_COMPARTMENT_TYPE );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 2 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
public void test_SyntaxChecker_validXHTML()
{
XMLToken token;
XMLNode node;
XMLTriple triple = new XMLTriple("p", "", "");
XMLAttributes att = new XMLAttributes();
XMLNamespaces ns = new XMLNamespaces();
ns.add( "http://www.w3.org/1999/xhtml", "");
XMLToken tt = new XMLToken("This is my text");
XMLNode n1 = new XMLNode(tt);
token = new XMLToken(triple,att,ns);
node = new XMLNode(token);
node.addChild(n1);
assertTrue( SyntaxChecker.hasExpectedXHTMLSyntax(node,null) == false );
triple = new XMLTriple("html", "", "");
ns.clear();
token = new XMLToken(triple,att,ns);
node = new XMLNode(token);
node.addChild(n1);
assertTrue( SyntaxChecker.hasExpectedXHTMLSyntax(node,null) == false );
}
public void test_L3_Event_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(3,1);
sbmlns.addNamespaces(xmlns);
Event e = new Event(sbmlns);
assertTrue( e.getTypeCode() == libsbml.SBML_EVENT );
assertTrue( e.getMetaId() == "" );
assertTrue( e.getNotes() == null );
assertTrue( e.getAnnotation() == null );
assertTrue( e.getLevel() == 3 );
assertTrue( e.getVersion() == 1 );
assertTrue( e.getNamespaces() != null );
assertTrue( e.getNamespaces().getLength() == 2 );
assertTrue( e.getId() == "" );
assertTrue( e.getName() == "" );
assertTrue( e.getUseValuesFromTriggerTime() == true );
assertEquals( false, e.isSetId() );
assertEquals( false, e.isSetName() );
assertEquals( false, e.isSetUseValuesFromTriggerTime() );
e = null;
}
XMLNode(XMLTriple triple, XMLAttributes attributes, XMLNamespaces namespaces) : this(libsbmlPINVOKE.new_XMLNode__SWIG_4(XMLTriple.getCPtr(triple), XMLAttributes.getCPtr(attributes), XMLNamespaces.getCPtr(namespaces)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending)
{
throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
}
/**
* Adds the package's Level 2 namespace(s).
*
* @ifnot clike @internal @endif
*
*
*
* This method is related to special facilities designed to support
* legacy behaviors surrounding SBML Level 2 models. Due to the
* historical background of the SBML %Layout package, libSBML implements
* special behavior for that package: it @em always creates a %Layout
* plugin object for any SBML Level 2 document it reads in,
* regardless of whether that document actually uses %Layout constructs.
* Since Level 2 does not use namespaces on the top level of the
* SBML document object, libSBML simply keys off the fact that the model
* is a Level 2 model. To allow the extensions for the %Layout and
* %Render (and possibly other) packages to support this behavior, the
* SBMLExtension class contains special methods to allow packages to
* hook themselves into the Level 2 parsing apparatus when necessary.
*
* @if clike
* This virtual method should be overridden by all package extensions
* that want to serialize to an SBML Level 2 annotation. In
* Level 2, the XML namespace declaration for the package is not
* placed on the top-level SBML document object but rather inside
* individual annotations. addL2Namespaces() is invoked automatically
* for Level 2 documents when an SBMLExtensionNamespace object is
* created; removeL2Namespaces() is automatically invoked by
* SBMLDocument to prevent the namespace(s) from being put on the
* top-level SBML Level 2 element (because Level 2 doesn't
* support namespaces there); and enableL2NamespaceForDocument() is
* called automatically when any SBML document (of any Level/Version) is
* read in.
* @endif
*
* @param xmlns an XMLNamespaces object that will be used for the annotation.
* Implementation should override this method with something that adds
* the package's namespace(s) to the set of namespaces in @p xmlns. For
* instance, here is the code from the %Layout package extension:
* @code{.cpp}
if (!xmlns->containsUri( LayoutExtension::getXmlnsL2()))
xmlns->add(LayoutExtension::getXmlnsL2(), 'layout');
@endcode
*/
public new void addL2Namespaces(XMLNamespaces xmlns)
{
libsbmlPINVOKE.SBMLExtension_addL2Namespaces(swigCPtr, XMLNamespaces.getCPtr(xmlns));
}
public void test_SBase_appendNotes()
{
XMLToken token;
XMLNode node;
XMLToken token1;
XMLNode node1;
XMLNode node2;
XMLTriple triple = new XMLTriple("p", "", "");
XMLAttributes att = new XMLAttributes();
XMLNamespaces ns = new XMLNamespaces();
ns.add( "http://www.w3.org/1999/xhtml", "");
XMLToken token4 = new XMLToken("This is my text");
XMLNode node4 = new XMLNode(token4);
XMLToken token5 = new XMLToken("This is additional text");
XMLNode node5 = new XMLNode(token5);
token = new XMLToken(triple,att,ns);
node = new XMLNode(token);
node.addChild(node4);
S.setNotes(node);
assertTrue( S.isSetNotes() == true );
token1 = new XMLToken(triple,att,ns);
node1 = new XMLNode(token1);
node1.addChild(node5);
S.appendNotes(node1);
assertTrue( S.isSetNotes() == true );
node2 = S.getNotes();
assertTrue( node2.getNumChildren() == 2 );
assertTrue(( "p" == node2.getChild(0).getName() ));
assertTrue( node2.getChild(0).getNumChildren() == 1 );
assertTrue(( "p" == node2.getChild(1).getName() ));
assertTrue( node2.getChild(1).getNumChildren() == 1 );
string chars1 = node2.getChild(0).getChild(0).getCharacters();
string chars2 = node2.getChild(1).getChild(0).getCharacters();
assertTrue(( "This is my text" == chars1 ));
assertTrue(( "This is additional text" == chars2 ));
node = null;
node1 = null;
}
public void test_L3_Species_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(3,1);
sbmlns.addNamespaces(xmlns);
Species s = new Species(sbmlns);
assertTrue( s.getTypeCode() == libsbml.SBML_SPECIES );
assertTrue( s.getMetaId() == "" );
assertTrue( s.getNotes() == null );
assertTrue( s.getAnnotation() == null );
assertTrue( s.getLevel() == 3 );
assertTrue( s.getVersion() == 1 );
assertTrue( s.getNamespaces() != null );
assertTrue( s.getNamespaces().getLength() == 2 );
assertTrue( s.getId() == "" );
assertTrue( s.getName() == "" );
assertTrue( s.getCompartment() == "" );
assertEquals( true, isnan(s.getInitialAmount()) );
assertEquals( true, isnan(s.getInitialConcentration()) );
assertTrue( s.getSubstanceUnits() == "" );
assertTrue( s.getHasOnlySubstanceUnits() == false );
assertTrue( s.getBoundaryCondition() == false );
assertTrue( s.getConstant() == false );
assertTrue( s.getConversionFactor() == "" );
assertEquals( false, s.isSetId() );
assertEquals( false, s.isSetName() );
assertEquals( false, s.isSetCompartment() );
assertEquals( false, s.isSetInitialAmount() );
assertEquals( false, s.isSetInitialConcentration() );
assertEquals( false, s.isSetSubstanceUnits() );
assertEquals( false, s.isSetHasOnlySubstanceUnits() );
assertEquals( false, s.isSetBoundaryCondition() );
assertEquals( false, s.isSetConstant() );
assertEquals( false, s.isSetConversionFactor() );
s = null;
}
/**
* Copy constructor; creates a copy of this XMLNamespaces list.
*
* @param orig the XMLNamespaces object to copy
*/
public XMLNamespaces(XMLNamespaces orig)
: this(libsbmlPINVOKE.new_XMLNamespaces__SWIG_1(XMLNamespaces.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
void addL2Namespaces(XMLNamespaces xmlns)
{
libsbmlPINVOKE.SBMLExtension_addL2Namespaces(swigCPtr, XMLNamespaces.getCPtr(xmlns));
}
/**
* Sets the namespaces relevant of this SBML object.
*
* The content of @p xmlns is copied, and this object's existing
* namespace content is deleted.
*
* The SBMLNamespaces object encapsulates SBML Level/Version/namespaces
* information. It is used to communicate the SBML Level, Version, and
* (in Level 3) packages used in addition to SBML Level 3 Core.
*
* @param xmlns the namespaces to set
*
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
*/
public int setNamespaces(XMLNamespaces xmlns)
{
int ret = libsbmlPINVOKE.SBase_setNamespaces(swigCPtr, XMLNamespaces.getCPtr(xmlns));
return ret;
}
public void test_XMLToken_newSetters_setNamespaces2()
{
XMLTriple triple = new XMLTriple("test","","");
XMLToken token = new XMLToken(triple);
XMLNamespaces ns = new XMLNamespaces();
assertTrue( token.getNamespacesLength() == 0 );
assertTrue( token.isNamespacesEmpty() == true );
ns.add( "http://test1.org/", "test1");
int i = token.setNamespaces(ns);
assertTrue( i == libsbml.LIBSBML_INVALID_XML_OPERATION );
assertTrue( token.getNamespacesLength() == 0 );
assertTrue( token.isNamespacesEmpty() == true );
triple = null;
token = null;
ns = null;
}
static XMLNode convertStringToXMLNode(string xmlstr, XMLNamespaces xmlns)
{
IntPtr cPtr = libsbmlPINVOKE.XMLNode_convertStringToXMLNode__SWIG_0(xmlstr, XMLNamespaces.getCPtr(xmlns));
XMLNode ret = (cPtr == IntPtr.Zero) ? null : new XMLNode(cPtr, true);
return(ret);
}
internal static HandleRef getCPtr(XMLNamespaces obj)
{
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
int addPkgNamespaces(XMLNamespaces xmlns)
{
int ret = libsbmlPINVOKE.SBMLNamespaces_addPkgNamespaces(swigCPtr, XMLNamespaces.getCPtr(xmlns));
return(ret);
}
public void test_WriteSBML_Constraint_full()
{
D.setLevelAndVersion(2,2,false);
string expected = "<constraint sboTerm=\"SBO:0000064\">\n" +
" <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" +
" <apply>\n" +
" <leq/>\n" +
" <ci> P1 </ci>\n" +
" <ci> t </ci>\n" +
" </apply>\n" +
" </math>\n" +
" <message>\n" +
" <p xmlns=\"http://www.w3.org/1999/xhtml\"> Species P1 is out of range </p>\n" +
" </message>\n" +
"</constraint>";
Constraint c = D.createModel().createConstraint();
ASTNode node = libsbml.parseFormula("leq(P1,t)");
c.setMath(node);
c.setSBOTerm(64);
XMLNode text = XMLNode.convertStringToXMLNode(" Species P1 is out of range ");
XMLTriple triple = new XMLTriple("p", "http://www.w3.org/1999/xhtml", "");
XMLAttributes att = new XMLAttributes();
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add("http://www.w3.org/1999/xhtml");
XMLNode p = new XMLNode(triple,att,xmlns);
p.addChild(text);
XMLTriple triple1 = new XMLTriple("message", "", "");
XMLAttributes att1 = new XMLAttributes();
XMLNode message = new XMLNode(triple1,att1);
message.addChild(p);
c.setMessage(message);
assertEquals( true, equals(expected,c.toSBML()) );
}
/**
* Creates a new start element XMLNode with the given set of attributes and
* namespace declarations.
*
* @param triple XMLTriple.
* @param attributes XMLAttributes, the attributes to set.
* @param namespaces XMLNamespaces, the namespaces to set.
* @param line a long integer, the line number (default = 0).
* @param column a long integer, the column number (default = 0).
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif
*/
public XMLNode(XMLTriple triple, XMLAttributes attributes, XMLNamespaces namespaces, long line, long column)
: this(libsbmlPINVOKE.new_XMLNode__SWIG_2(XMLTriple.getCPtr(triple), XMLAttributes.getCPtr(attributes), XMLNamespaces.getCPtr(namespaces), line, column), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
internal static HandleRef getCPtrAndDisown(XMLNamespaces obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return ptr;
}
/**
* Returns an XMLNode which is derived from a string containing XML
* content.
*
* The XML namespace must be defined using argument @p xmlns if the
* corresponding XML namespace attribute is not part of the string of the
* first argument.
*
* @param xmlstr string to be converted to a XML node.
* @param xmlns XMLNamespaces the namespaces to set (default value is @c null).
*
* @note The caller owns the returned XMLNode and is reponsible for
* deleting it. The returned XMLNode object is a dummy root (container)
* XMLNode if the top-level element in the given XML string is NOT
* <code><html></code>, <code><body></code>,
* <code><annotation></code>, or <code><notes></code>. In
* the dummy root node, each top-level element in the given XML string is
* contained as a child XMLNode. XMLToken::isEOF() can be used to
* identify if the returned XMLNode object is a dummy node.
*
* @return a XMLNode which is converted from string @p xmlstr. If the
* conversion failed, this method returns @c null.
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif
*/
public static XMLNode convertStringToXMLNode(string xmlstr, XMLNamespaces xmlns)
{
IntPtr cPtr = libsbmlPINVOKE.XMLNode_convertStringToXMLNode__SWIG_0(xmlstr, XMLNamespaces.getCPtr(xmlns));
XMLNode ret = (cPtr == IntPtr.Zero) ? null : new XMLNode(cPtr, true);
return ret;
}
public void test_FunctionDefinition_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
FunctionDefinition object1 = new FunctionDefinition(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
public void test_L3_Unit_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(3,1);
sbmlns.addNamespaces(xmlns);
Unit u = new Unit(sbmlns);
assertTrue( u.getTypeCode() == libsbml.SBML_UNIT );
assertTrue( u.getMetaId() == "" );
assertTrue( u.getNotes() == null );
assertTrue( u.getAnnotation() == null );
assertTrue( u.getLevel() == 3 );
assertTrue( u.getVersion() == 1 );
assertTrue( u.getNamespaces() != null );
assertTrue( u.getNamespaces().getLength() == 2 );
assertTrue( u.getKind() == libsbml.UNIT_KIND_INVALID );
assertEquals( true, isnan(u.getExponentAsDouble()) );
assertEquals( true, isnan(u.getMultiplier()) );
assertEquals( false, u.isSetKind() );
assertEquals( false, u.isSetExponent() );
assertEquals( false, u.isSetMultiplier() );
assertEquals( false, u.isSetScale() );
u = null;
}
public void test_NS_copyConstructor()
{
XMLNamespaces ns = new XMLNamespaces();
ns.add("http://test1.org/", "test1");
assertTrue( ns.getLength() == 1 );
assertTrue( ns.isEmpty() == false );
assertTrue( ns.getPrefix(0) == "test1" );
assertTrue( ns.getURI("test1") == "http://test1.org/" );
XMLNamespaces ns2 = new XMLNamespaces(ns);
assertTrue( ns2.getLength() == 1 );
assertTrue( ns2.isEmpty() == false );
assertTrue( ns2.getPrefix(0) == "test1" );
assertTrue( ns2.getURI("test1") == "http://test1.org/" );
ns2 = null;
ns = null;
}
/**
* Returns the XML namespaces declared for this token.
*
* @return the XML namespace declarations for this XML element.
*/
public XMLNamespaces getNamespaces()
{
XMLNamespaces ret = new XMLNamespaces(libsbmlPINVOKE.XMLToken_getNamespaces(swigCPtr), false);
return ret;
}
/**
* Add the XML namespaces of package extensions in the given XMLNamespace
* object to the set of namespaces within this SBMLNamespaces object.
*
* Non-package XML namespaces are not added by this function.
*
* @param xmlns the XML namespaces to be added.
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbmlcs#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbmlcs#LIBSBML_INVALID_ATTRIBUTE_VALUE LIBSBML_INVALID_ATTRIBUTE_VALUE@endlink
*
* @note XML namespaces of a non-registered package extensions are not
* added (just ignored) by this function. @link libsbmlcs#LIBSBML_INVALID_ATTRIBUTE_VALUE LIBSBML_INVALID_ATTRIBUTE_VALUE@endlink will be returned if the given
* xmlns is null.
*/
/* libsbml-internal */
public int addPkgNamespaces(XMLNamespaces xmlns)
{
int ret = libsbmlPINVOKE.SBMLNamespaces_addPkgNamespaces(swigCPtr, XMLNamespaces.getCPtr(xmlns));
return ret;
}
/**
* Creates an XML start element with attributes and namespace declarations.
*
* @param triple an XMLTriple object describing the start tag.
*
* @param attributes XMLAttributes, the attributes to set on the element to
* be created.
*
* @param namespaces XMLNamespaces, the namespaces to set on the element to
* be created.
*
* @param line a long integer, the line number to associate with the
* token (default = 0).
*
* @param column a long integer, the column number to associate with the
* token (default = 0).
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif
*/
public XMLToken(XMLTriple triple, XMLAttributes attributes, XMLNamespaces namespaces)
: this(libsbmlPINVOKE.new_XMLToken__SWIG_3(XMLTriple.getCPtr(triple), XMLAttributes.getCPtr(attributes), XMLNamespaces.getCPtr(namespaces)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
public void test_SBase_appendNotes8()
{
XMLAttributes att = new XMLAttributes();
XMLNamespaces ns = new XMLNamespaces();
ns.add( "http://www.w3.org/1999/xhtml", "");
XMLTriple body_triple = new XMLTriple("body", "", "");
XMLTriple p_triple = new XMLTriple("p", "", "");
XMLToken body_token = new XMLToken(body_triple,att,ns);
XMLToken p_token = new XMLToken(p_triple,att);
XMLToken text_token = new XMLToken("This is my text");
XMLNode body_node = new XMLNode(body_token);
XMLNode p_node = new XMLNode(p_token);
XMLNode text_node = new XMLNode(text_token);
XMLToken p_token1 = new XMLToken(p_triple,att,ns);
XMLToken text_token1 = new XMLToken("This is more text");
XMLNode p_node1 = new XMLNode(p_token1);
XMLNode text_node1 = new XMLNode(text_token1);
XMLNode notes;
XMLNode child, child1;
p_node.addChild(text_node);
body_node.addChild(p_node);
p_node1.addChild(text_node1);
S.setNotes(body_node);
S.appendNotes(p_node1);
notes = S.getNotes();
assertTrue(( "notes" == notes.getName() ));
assertTrue( notes.getNumChildren() == 1 );
child = notes.getChild(0);
assertTrue(( "body" == child.getName() ));
assertTrue( child.getNumChildren() == 2 );
child1 = child.getChild(0);
assertTrue(( "p" == child1.getName() ));
assertTrue( child1.getNumChildren() == 1 );
child1 = child1.getChild(0);
assertTrue(( "This is my text" == child1.getCharacters() ));
assertTrue( child1.getNumChildren() == 0 );
child1 = child.getChild(1);
assertTrue(( "p" == child1.getName() ));
assertTrue( child1.getNumChildren() == 1 );
child1 = child1.getChild(0);
assertTrue(( "This is more text" == child1.getCharacters() ));
assertTrue( child1.getNumChildren() == 0 );
att = null;
ns = null;
body_triple = null;
p_triple = null;
body_token = null;
p_token = null;
text_token = null;
text_token1 = null;
p_token1 = null;
body_node = null;
p_node = null;
text_node = null;
p_node1 = null;
text_node1 = null;
}
/**
* Sets the XML namespaces on this XML element.
*
*
*
* This operation only makes sense for XML start elements. This
* method will return @link libsbml#LIBSBML_INVALID_XML_OPERATION LIBSBML_INVALID_XML_OPERATION@endlink if this XMLToken object is not an XML start
* element.
*
*
*
* @param namespaces the XMLNamespaces object to be assigned to this XMLToken object.
*
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbml#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink
* @li @link libsbml#LIBSBML_INVALID_XML_OPERATION LIBSBML_INVALID_XML_OPERATION@endlink
* @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
*
* @note This function replaces any existing XMLNamespaces object on this
* XMLToken object with the new one given by @p namespaces.
*/
public int setNamespaces(XMLNamespaces namespaces)
{
int ret = libsbmlPINVOKE.XMLToken_setNamespaces(swigCPtr, XMLNamespaces.getCPtr(namespaces));
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
return ret;
}
/**
* Removes SBML Level 2 namespaces from the namespace list.
*
* @if clike
* This will call all overridden
* <code>SBMLExtension::removeL2Namespaces()</code> methods.
* @endif
*
* @param xmlns an XMLNamespaces object listing one or more namespaces
* to be removed.
*/
public void removeL2Namespaces(XMLNamespaces xmlns)
{
libsbmlPINVOKE.SBMLExtensionRegistry_removeL2Namespaces(swigCPtr, XMLNamespaces.getCPtr(xmlns));
}
public void test_L3_Compartment_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(3,1);
sbmlns.addNamespaces(xmlns);
Compartment c = new Compartment(sbmlns);
assertTrue( c.getTypeCode() == libsbml.SBML_COMPARTMENT );
assertTrue( c.getMetaId() == "" );
assertTrue( c.getNotes() == null );
assertTrue( c.getAnnotation() == null );
assertTrue( c.getLevel() == 3 );
assertTrue( c.getVersion() == 1 );
assertTrue( c.getNamespaces() != null );
assertTrue( c.getNamespaces().getLength() == 2 );
assertTrue( c.getId() == "" );
assertTrue( c.getName() == "" );
assertTrue( c.getUnits() == "" );
assertTrue( c.getOutside() == "" );
assertEquals( true, isnan(c.getSpatialDimensionsAsDouble()) );
assertEquals( true, isnan(c.getVolume()) );
assertTrue( c.getConstant() == true );
assertEquals( false, c.isSetId() );
assertEquals( false, c.isSetSpatialDimensions() );
assertEquals( false, c.isSetName() );
assertEquals( false, c.isSetSize() );
assertEquals( false, c.isSetVolume() );
assertEquals( false, c.isSetUnits() );
assertEquals( false, c.isSetOutside() );
assertEquals( false, c.isSetConstant() );
c = null;
}