public void setUp() { D = new Trigger(2,4); if (D == null); { } }
public void test_Trigger_createWithNS() { XMLNamespaces xmlns = new XMLNamespaces(); xmlns.add( "http://www.sbml.org", "testsbml"); SBMLNamespaces sbmlns = new SBMLNamespaces(2,1); sbmlns.addNamespaces(xmlns); Trigger object1 = new Trigger(sbmlns); assertTrue( object1.getTypeCode() == libsbml.SBML_TRIGGER ); assertTrue( object1.getMetaId() == "" ); assertTrue( object1.getNotes() == null ); assertTrue( object1.getAnnotation() == null ); assertTrue( object1.getLevel() == 2 ); assertTrue( object1.getVersion() == 1 ); assertTrue( object1.getNamespaces() != null ); assertTrue( object1.getNamespaces().getLength() == 2 ); object1 = null; }
internal static HandleRef getCPtrAndDisown(Trigger obj) { HandleRef ptr = new HandleRef(null, IntPtr.Zero); if (obj != null) { ptr = obj.swigCPtr; obj.swigCMemOwn = false; } return ptr; }
/** * Copy constructor; creates a copy of this Trigger. */ public Trigger(Trigger orig) : this(libsbmlPINVOKE.new_Trigger__SWIG_2(Trigger.getCPtr(orig)), true) { if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve(); }
public void test_Model_addEvent2() { Model m = new Model(2,2); Event e = new Event(2,1); Trigger t = new Trigger(2,1); e.setTrigger(t); e.createEventAssignment(); int i = m.addEvent(e); assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ); assertTrue( m.getNumEvents() == 0 ); e = null; m = null; }
public void test_WriteSBML_Event_trigger_withSBO() { string expected = "<event id=\"e\">\n" + " <trigger sboTerm=\"SBO:0000064\">\n" + " <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" + " <apply>\n" + " <leq/>\n" + " <ci> P1 </ci>\n" + " <ci> t </ci>\n" + " </apply>\n" + " </math>\n" + " </trigger>\n" + "</event>"; D.setLevelAndVersion(2,3,false); Event e = D.createModel().createEvent(); e.setId("e"); ASTNode node = libsbml.parseFormula("leq(P1,t)"); Trigger t = new Trigger ( 2,3 ); t.setMath(node); t.setSBOTerm(64); e.setTrigger(t); assertEquals( true, equals(expected,e.toSBML()) ); }
public void test_WriteSBML_Event_both() { string expected = "<event id=\"e\">\n" + " <trigger>\n" + " <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" + " <apply>\n" + " <leq/>\n" + " <ci> P1 </ci>\n" + " <ci> t </ci>\n" + " </apply>\n" + " </math>\n" + " </trigger>\n" + " <delay>\n" + " <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" + " <cn type=\"integer\"> 5 </cn>\n" + " </math>\n" + " </delay>\n" + "</event>"; D.setLevelAndVersion(2,1,false); Event e = D.createModel().createEvent(); e.setId("e"); ASTNode node1 = libsbml.parseFormula("leq(P1,t)"); Trigger t = new Trigger ( 2,1 ); t.setMath(node1); ASTNode node = libsbml.parseFormula("5"); Delay d = new Delay ( 2,1 ); d.setMath(node); e.setDelay(d); e.setTrigger(t); assertEquals( true, equals(expected,e.toSBML()) ); }
public void test_Event_setTrigger2() { ASTNode math1 = libsbml.parseFormula("0"); Trigger trigger = new Trigger(2,4); trigger.setMath(math1); int i = E.setTrigger(trigger); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertNotEquals(E.getTrigger(),null); assertEquals( true, E.isSetTrigger() ); }
public void test_Trigger_copyConstructor() { Trigger o1 = new Trigger(2,4); ASTNode node = new ASTNode(libsbml.AST_CONSTANT_PI); o1.setMath(node); node = null; assertTrue( o1.getMath() != null ); Trigger o2 = new Trigger(o1); assertTrue( o2.getMath() != null ); assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ); o2 = null; o1 = null; }
public void test_Event_parent_add() { Event e = new Event(2,4); Trigger t = new Trigger(2,4); e.setTrigger(t); e.createEventAssignment(); Model m = new Model(2,4); m.addEvent(e); e = null; ListOf lo = m.getListOfEvents(); assertTrue( lo == m.getEvent(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_Trigger() { Trigger t = new Trigger(2,4); assertEquals( true, t.hasRequiredAttributes() ); t = null; }
public void tearDown() { D = null; }
public void test_Trigger_ancestor_add() { Trigger d = new Trigger(2,4); Event e = new Event(2,4); e.setTrigger(d); d = null; Trigger obj = e.getTrigger(); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); e = null; }
public void test_Event_ancestor_add() { Event e = new Event(2,4); Model m = new Model(2,4); Trigger t = new Trigger(2,4); e.setTrigger(t); e.createEventAssignment(); m.addEvent(e); e = null; ListOf lo = m.getListOfEvents(); Event obj = m.getEvent(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); }
public void test_Event_parent_NULL() { SBMLDocument d = new SBMLDocument(2,4); Model m = d.createModel(); Event c = m.createEvent(); EventAssignment ea = c.createEventAssignment(); Trigger t = new Trigger(2,4); t.setMath(new ASTNode()); Delay dy = new Delay(2,4); dy.setMath(new ASTNode()); c.setTrigger(t); c.setDelay(dy); assertTrue( c.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( c.getTrigger().getParentSBMLObject() == c ); assertEquals(c.getDelay().getSBMLDocument(),d); assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == c ); Event c1 = c.clone(); d = null; assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( c1.getParentSBMLObject() == null ); assertEquals(c1.getSBMLDocument(),null); assertTrue( c1.getEventAssignment(0).getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( c1.getEventAssignment(0).getAncestorOfType(libsbml.SBML_EVENT) == c1 ); assertTrue( c1.getEventAssignment(0).getParentSBMLObject() != null ); assertEquals(c1.getEventAssignment(0).getSBMLDocument(),null); assertTrue( c1.getTrigger().getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( c1.getTrigger().getAncestorOfType(libsbml.SBML_EVENT) == c1 ); assertTrue( c1.getTrigger().getParentSBMLObject() != null ); assertEquals(c1.getTrigger().getSBMLDocument(),null); assertTrue( c1.getDelay().getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( c1.getDelay().getAncestorOfType(libsbml.SBML_EVENT) == c1 ); assertTrue( c1.getDelay().getParentSBMLObject() != null ); assertEquals(c1.getDelay().getSBMLDocument(),null); c1 = null; }
public void test_L3_Event_hasRequiredElements() { Event e = new Event(3,1); assertEquals( false, e.hasRequiredElements() ); Trigger t = new Trigger(3,1); e.setTrigger(t); assertEquals( true, e.hasRequiredElements() ); e = null; }
public void test_Trigger_parent_add() { Trigger d = new Trigger(2,4); Event e = new Event(2,4); e.setTrigger(d); d = null; assertTrue( e == e.getTrigger().getParentSBMLObject() ); e = null; }
public void test_Event_setTrigger1() { Trigger trigger = new Trigger(2,1); int i = E.setTrigger(trigger); assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ); assertEquals( false, E.isSetTrigger() ); }
public void test_Trigger_constructor() { SBase s; try { s = new Trigger(2,1); s = new Trigger(2,2); s = new Trigger(2,3); s = new Trigger(2,4); s = new Trigger(SN21); s = new Trigger(SN22); s = new Trigger(SN23); s = new Trigger(SN24); } catch (SBMLConstructorException e) { s = null; } assertTrue(s != null); string msg = ""; try { s = new Trigger(1,1); } catch (SBMLConstructorException e) { msg = e.Message; } assertTrue(msg == ErrMsg); msg = ""; try { s = new Trigger(1,2); } catch (SBMLConstructorException e) { msg = e.Message; } assertTrue(msg == ErrMsg); msg = ""; try { s = new Trigger(SN11); } catch (SBMLConstructorException e) { msg = e.Message; } assertTrue(msg == ErrMsg); msg = ""; try { s = new Trigger(SN12); } catch (SBMLConstructorException e) { msg = e.Message; } assertTrue(msg == ErrMsg); try { s = new Trigger(99,99); } catch (SBMLConstructorException e) { msg = e.Message; } assertTrue(msg == ErrMsg); }
public void test_internal_consistency_check_99905_trigger() { SBMLDocument d = new SBMLDocument(2,4); long errors; Trigger trigger = new Trigger(2,4); Event e = new Event(2,4); Model m = d.createModel(); d.setLevelAndVersion(2,2,false); trigger.setSBOTerm(5); e.setTrigger(trigger); m.addEvent(e); errors = d.checkInternalConsistency(); assertTrue( errors == 0 ); d = null; }
public void test_Model_getEventById() { Event e1 = new Event(2,4); Event e2 = new Event(2,4); Trigger t = new Trigger(2,4); e1.setTrigger(t); e2.setTrigger(t); e1.createEventAssignment(); e2.createEventAssignment(); e1.setId( "e1" ); e2.setId( "e2" ); M.addEvent(e1); M.addEvent(e2); assertTrue( M.getNumEvents() == 2 ); assertNotEquals(M.getEvent( "e1" ),e1); assertNotEquals(M.getEvent( "e2" ),e2); assertEquals(M.getEvent( "e3" ),null); }
public void test_WriteSBML_Event_full() { string expected = "<event id=\"e\">\n" + " <trigger>\n" + " <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" + " <apply>\n" + " <leq/>\n" + " <ci> P1 </ci>\n" + " <ci> t </ci>\n" + " </apply>\n" + " </math>\n" + " </trigger>\n" + " <listOfEventAssignments>\n" + " <eventAssignment variable=\"k2\" sboTerm=\"SBO:0000064\">\n" + " <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" + " <cn type=\"integer\"> 0 </cn>\n" + " </math>\n" + " </eventAssignment>\n" + " </listOfEventAssignments>\n" + "</event>"; D.setLevelAndVersion(2,3,false); Event e = D.createModel().createEvent(); e.setId("e"); ASTNode node = libsbml.parseFormula("leq(P1,t)"); Trigger t = new Trigger ( 2,3 ); t.setMath(node); ASTNode math = libsbml.parseFormula("0"); EventAssignment ea = new EventAssignment ( 2,3 ); ea.setVariable("k2"); ea.setMath(math); ea.setSBOTerm(64); e.setTrigger(t); e.addEventAssignment(ea); assertEquals( true, equals(expected,e.toSBML()) ); }
public void test_Trigger() { Trigger t = new Trigger(2,4); assertEquals( false, (t.hasRequiredElements()) ); t.setMath(libsbml.parseFormula("ar")); assertEquals( true, t.hasRequiredElements() ); t = null; }
public void test_Model_addEvent1() { Model m = new Model(2,2); Event e = new Event(2,2); Trigger t = new Trigger(2,2); int i = m.addEvent(e); assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ); e.setTrigger(t); i = m.addEvent(e); assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ); e.createEventAssignment(); i = m.addEvent(e); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( m.getNumEvents() == 1 ); e = null; m = null; }
public void test_Event() { Event e = new Event(2,4); assertEquals( false, (e.hasRequiredElements()) ); Trigger t = new Trigger(2,4); e.setTrigger(t); assertEquals( false, (e.hasRequiredElements()) ); e.createEventAssignment(); assertEquals( true, e.hasRequiredElements() ); e = null; }
public void test_Model_addEvent4() { Model m = new Model(2,2); Event e = new Event(2,2); Trigger t = new Trigger(2,2); e.setId( "e"); e.setTrigger(t); e.createEventAssignment(); Event e1 = new Event(2,2); e1.setId( "e"); e1.setTrigger(t); e1.createEventAssignment(); int i = m.addEvent(e); assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ); assertTrue( m.getNumEvents() == 1 ); i = m.addEvent(e1); assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ); assertTrue( m.getNumEvents() == 1 ); e = null; e1 = null; m = null; }
public void test_Event_setTrigger() { ASTNode math1 = libsbml.parseFormula("0"); Trigger trigger = new Trigger(2,4); trigger.setMath(math1); E.setTrigger(trigger); assertNotEquals(E.getTrigger(),null); assertEquals( true, E.isSetTrigger() ); if (E.getTrigger() == trigger); { } E.setTrigger(E.getTrigger()); assertNotEquals(E.getTrigger(),trigger); E.setTrigger(null); assertEquals( false, E.isSetTrigger() ); if (E.getTrigger() != null); { } }
internal static HandleRef getCPtr(Trigger obj) { return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr; }
public void test_Event_full() { ASTNode math1 = libsbml.parseFormula("0"); Trigger trigger = new Trigger(2,4); ASTNode math = libsbml.parseFormula("0"); Event e = new Event(2,4); EventAssignment ea = new EventAssignment(2,4); ea.setVariable( "k"); ea.setMath(math); trigger.setMath(math1); e.setTrigger(trigger); e.setId( "e1"); e.setName( "Set k2 to zero when P1 <= t"); e.addEventAssignment(ea); assertTrue( e.getNumEventAssignments() == 1 ); assertNotEquals(e.getEventAssignment(0),ea); math = null; e = null; }
/** * Sets the trigger definition of this Event to a copy of the given * Trigger object instance. * * @param trigger the Trigger object instance to use. * * @return integer value indicating success/failure of the * function. @if clike The value is drawn from the * enumeration #OperationReturnValues_t. @endif The possible values * returned by this function are: * @li @link libsbmlcs.libsbml.LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS @endlink * @li @link libsbmlcs.libsbml.LIBSBML_LEVEL_MISMATCH LIBSBML_LEVEL_MISMATCH @endlink * @li @link libsbmlcs.libsbml.LIBSBML_VERSION_MISMATCH LIBSBML_VERSION_MISMATCH @endlink */ public int setTrigger(Trigger trigger) { int ret = libsbmlPINVOKE.Event_setTrigger(swigCPtr, Trigger.getCPtr(trigger)); return ret; }
internal static HandleRef getCPtr(Trigger obj) { return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr); }