public void setUp()
{
D = new Trigger(2,4);
if (D == null);
{
}
}
public void test_Trigger_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
Trigger object1 = new Trigger(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_TRIGGER );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
internal static HandleRef getCPtrAndDisown(Trigger obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return ptr;
}
/**
* Copy constructor; creates a copy of this Trigger.
*/
public Trigger(Trigger orig)
: this(libsbmlPINVOKE.new_Trigger__SWIG_2(Trigger.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
public void test_Model_addEvent2()
{
Model m = new Model(2,2);
Event e = new Event(2,1);
Trigger t = new Trigger(2,1);
e.setTrigger(t);
e.createEventAssignment();
int i = m.addEvent(e);
assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
assertTrue( m.getNumEvents() == 0 );
e = null;
m = null;
}
public void test_WriteSBML_Event_trigger_withSBO()
{
string expected = "<event id=\"e\">\n" +
" <trigger sboTerm=\"SBO:0000064\">\n" +
" <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" +
" <apply>\n" +
" <leq/>\n" +
" <ci> P1 </ci>\n" +
" <ci> t </ci>\n" +
" </apply>\n" +
" </math>\n" +
" </trigger>\n" +
"</event>";
D.setLevelAndVersion(2,3,false);
Event e = D.createModel().createEvent();
e.setId("e");
ASTNode node = libsbml.parseFormula("leq(P1,t)");
Trigger t = new Trigger ( 2,3 );
t.setMath(node);
t.setSBOTerm(64);
e.setTrigger(t);
assertEquals( true, equals(expected,e.toSBML()) );
}
public void test_WriteSBML_Event_both()
{
string expected = "<event id=\"e\">\n" +
" <trigger>\n" +
" <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" +
" <apply>\n" +
" <leq/>\n" +
" <ci> P1 </ci>\n" +
" <ci> t </ci>\n" +
" </apply>\n" +
" </math>\n" +
" </trigger>\n" +
" <delay>\n" +
" <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" +
" <cn type=\"integer\"> 5 </cn>\n" +
" </math>\n" +
" </delay>\n" +
"</event>";
D.setLevelAndVersion(2,1,false);
Event e = D.createModel().createEvent();
e.setId("e");
ASTNode node1 = libsbml.parseFormula("leq(P1,t)");
Trigger t = new Trigger ( 2,1 );
t.setMath(node1);
ASTNode node = libsbml.parseFormula("5");
Delay d = new Delay ( 2,1 );
d.setMath(node);
e.setDelay(d);
e.setTrigger(t);
assertEquals( true, equals(expected,e.toSBML()) );
}
public void test_Event_setTrigger2()
{
ASTNode math1 = libsbml.parseFormula("0");
Trigger trigger = new Trigger(2,4);
trigger.setMath(math1);
int i = E.setTrigger(trigger);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertNotEquals(E.getTrigger(),null);
assertEquals( true, E.isSetTrigger() );
}
public void test_Trigger_copyConstructor()
{
Trigger o1 = new Trigger(2,4);
ASTNode node = new ASTNode(libsbml.AST_CONSTANT_PI);
o1.setMath(node);
node = null;
assertTrue( o1.getMath() != null );
Trigger o2 = new Trigger(o1);
assertTrue( o2.getMath() != null );
assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() );
o2 = null;
o1 = null;
}
public void test_Event_parent_add()
{
Event e = new Event(2,4);
Trigger t = new Trigger(2,4);
e.setTrigger(t);
e.createEventAssignment();
Model m = new Model(2,4);
m.addEvent(e);
e = null;
ListOf lo = m.getListOfEvents();
assertTrue( lo == m.getEvent(0).getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_Trigger()
{
Trigger t = new Trigger(2,4);
assertEquals( true, t.hasRequiredAttributes() );
t = null;
}
public void tearDown()
{
D = null;
}
public void test_Trigger_ancestor_add()
{
Trigger d = new Trigger(2,4);
Event e = new Event(2,4);
e.setTrigger(d);
d = null;
Trigger obj = e.getTrigger();
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
e = null;
}
public void test_Event_ancestor_add()
{
Event e = new Event(2,4);
Model m = new Model(2,4);
Trigger t = new Trigger(2,4);
e.setTrigger(t);
e.createEventAssignment();
m.addEvent(e);
e = null;
ListOf lo = m.getListOfEvents();
Event obj = m.getEvent(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}
public void test_Event_parent_NULL()
{
SBMLDocument d = new SBMLDocument(2,4);
Model m = d.createModel();
Event c = m.createEvent();
EventAssignment ea = c.createEventAssignment();
Trigger t = new Trigger(2,4);
t.setMath(new ASTNode());
Delay dy = new Delay(2,4);
dy.setMath(new ASTNode());
c.setTrigger(t);
c.setDelay(dy);
assertTrue( c.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( c.getTrigger().getParentSBMLObject() == c );
assertEquals(c.getDelay().getSBMLDocument(),d);
assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == c );
Event c1 = c.clone();
d = null;
assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == null );
assertTrue( c1.getParentSBMLObject() == null );
assertEquals(c1.getSBMLDocument(),null);
assertTrue( c1.getEventAssignment(0).getAncestorOfType(libsbml.SBML_MODEL) == null );
assertTrue( c1.getEventAssignment(0).getAncestorOfType(libsbml.SBML_EVENT) == c1 );
assertTrue( c1.getEventAssignment(0).getParentSBMLObject() != null );
assertEquals(c1.getEventAssignment(0).getSBMLDocument(),null);
assertTrue( c1.getTrigger().getAncestorOfType(libsbml.SBML_MODEL) == null );
assertTrue( c1.getTrigger().getAncestorOfType(libsbml.SBML_EVENT) == c1 );
assertTrue( c1.getTrigger().getParentSBMLObject() != null );
assertEquals(c1.getTrigger().getSBMLDocument(),null);
assertTrue( c1.getDelay().getAncestorOfType(libsbml.SBML_MODEL) == null );
assertTrue( c1.getDelay().getAncestorOfType(libsbml.SBML_EVENT) == c1 );
assertTrue( c1.getDelay().getParentSBMLObject() != null );
assertEquals(c1.getDelay().getSBMLDocument(),null);
c1 = null;
}
public void test_L3_Event_hasRequiredElements()
{
Event e = new Event(3,1);
assertEquals( false, e.hasRequiredElements() );
Trigger t = new Trigger(3,1);
e.setTrigger(t);
assertEquals( true, e.hasRequiredElements() );
e = null;
}
public void test_Trigger_parent_add()
{
Trigger d = new Trigger(2,4);
Event e = new Event(2,4);
e.setTrigger(d);
d = null;
assertTrue( e == e.getTrigger().getParentSBMLObject() );
e = null;
}
public void test_Event_setTrigger1()
{
Trigger trigger = new Trigger(2,1);
int i = E.setTrigger(trigger);
assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
assertEquals( false, E.isSetTrigger() );
}
public void test_Trigger_constructor()
{
SBase s;
try
{
s = new Trigger(2,1);
s = new Trigger(2,2);
s = new Trigger(2,3);
s = new Trigger(2,4);
s = new Trigger(SN21);
s = new Trigger(SN22);
s = new Trigger(SN23);
s = new Trigger(SN24);
}
catch (SBMLConstructorException e)
{
s = null;
}
assertTrue(s != null);
string msg = "";
try
{
s = new Trigger(1,1);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new Trigger(1,2);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new Trigger(SN11);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new Trigger(SN12);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
try
{
s = new Trigger(99,99);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
}
public void test_internal_consistency_check_99905_trigger()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Trigger trigger = new Trigger(2,4);
Event e = new Event(2,4);
Model m = d.createModel();
d.setLevelAndVersion(2,2,false);
trigger.setSBOTerm(5);
e.setTrigger(trigger);
m.addEvent(e);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_Model_getEventById()
{
Event e1 = new Event(2,4);
Event e2 = new Event(2,4);
Trigger t = new Trigger(2,4);
e1.setTrigger(t);
e2.setTrigger(t);
e1.createEventAssignment();
e2.createEventAssignment();
e1.setId( "e1" );
e2.setId( "e2" );
M.addEvent(e1);
M.addEvent(e2);
assertTrue( M.getNumEvents() == 2 );
assertNotEquals(M.getEvent( "e1" ),e1);
assertNotEquals(M.getEvent( "e2" ),e2);
assertEquals(M.getEvent( "e3" ),null);
}
public void test_WriteSBML_Event_full()
{
string expected = "<event id=\"e\">\n" +
" <trigger>\n" +
" <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" +
" <apply>\n" +
" <leq/>\n" +
" <ci> P1 </ci>\n" +
" <ci> t </ci>\n" +
" </apply>\n" +
" </math>\n" +
" </trigger>\n" +
" <listOfEventAssignments>\n" +
" <eventAssignment variable=\"k2\" sboTerm=\"SBO:0000064\">\n" +
" <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" +
" <cn type=\"integer\"> 0 </cn>\n" +
" </math>\n" +
" </eventAssignment>\n" +
" </listOfEventAssignments>\n" +
"</event>";
D.setLevelAndVersion(2,3,false);
Event e = D.createModel().createEvent();
e.setId("e");
ASTNode node = libsbml.parseFormula("leq(P1,t)");
Trigger t = new Trigger ( 2,3 );
t.setMath(node);
ASTNode math = libsbml.parseFormula("0");
EventAssignment ea = new EventAssignment ( 2,3 );
ea.setVariable("k2");
ea.setMath(math);
ea.setSBOTerm(64);
e.setTrigger(t);
e.addEventAssignment(ea);
assertEquals( true, equals(expected,e.toSBML()) );
}
public void test_Trigger()
{
Trigger t = new Trigger(2,4);
assertEquals( false, (t.hasRequiredElements()) );
t.setMath(libsbml.parseFormula("ar"));
assertEquals( true, t.hasRequiredElements() );
t = null;
}
public void test_Model_addEvent1()
{
Model m = new Model(2,2);
Event e = new Event(2,2);
Trigger t = new Trigger(2,2);
int i = m.addEvent(e);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
e.setTrigger(t);
i = m.addEvent(e);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
e.createEventAssignment();
i = m.addEvent(e);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( m.getNumEvents() == 1 );
e = null;
m = null;
}
public void test_Event()
{
Event e = new Event(2,4);
assertEquals( false, (e.hasRequiredElements()) );
Trigger t = new Trigger(2,4);
e.setTrigger(t);
assertEquals( false, (e.hasRequiredElements()) );
e.createEventAssignment();
assertEquals( true, e.hasRequiredElements() );
e = null;
}
public void test_Model_addEvent4()
{
Model m = new Model(2,2);
Event e = new Event(2,2);
Trigger t = new Trigger(2,2);
e.setId( "e");
e.setTrigger(t);
e.createEventAssignment();
Event e1 = new Event(2,2);
e1.setId( "e");
e1.setTrigger(t);
e1.createEventAssignment();
int i = m.addEvent(e);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( m.getNumEvents() == 1 );
i = m.addEvent(e1);
assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID );
assertTrue( m.getNumEvents() == 1 );
e = null;
e1 = null;
m = null;
}
public void test_Event_setTrigger()
{
ASTNode math1 = libsbml.parseFormula("0");
Trigger trigger = new Trigger(2,4);
trigger.setMath(math1);
E.setTrigger(trigger);
assertNotEquals(E.getTrigger(),null);
assertEquals( true, E.isSetTrigger() );
if (E.getTrigger() == trigger);
{
}
E.setTrigger(E.getTrigger());
assertNotEquals(E.getTrigger(),trigger);
E.setTrigger(null);
assertEquals( false, E.isSetTrigger() );
if (E.getTrigger() != null);
{
}
}
internal static HandleRef getCPtr(Trigger obj)
{
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
public void test_Event_full()
{
ASTNode math1 = libsbml.parseFormula("0");
Trigger trigger = new Trigger(2,4);
ASTNode math = libsbml.parseFormula("0");
Event e = new Event(2,4);
EventAssignment ea = new EventAssignment(2,4);
ea.setVariable( "k");
ea.setMath(math);
trigger.setMath(math1);
e.setTrigger(trigger);
e.setId( "e1");
e.setName( "Set k2 to zero when P1 <= t");
e.addEventAssignment(ea);
assertTrue( e.getNumEventAssignments() == 1 );
assertNotEquals(e.getEventAssignment(0),ea);
math = null;
e = null;
}
/**
* Sets the trigger definition of this Event to a copy of the given
* Trigger object instance.
*
* @param trigger the Trigger object instance to use.
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbmlcs.libsbml.LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS @endlink
* @li @link libsbmlcs.libsbml.LIBSBML_LEVEL_MISMATCH LIBSBML_LEVEL_MISMATCH @endlink
* @li @link libsbmlcs.libsbml.LIBSBML_VERSION_MISMATCH LIBSBML_VERSION_MISMATCH @endlink
*/
public int setTrigger(Trigger trigger)
{
int ret = libsbmlPINVOKE.Event_setTrigger(swigCPtr, Trigger.getCPtr(trigger));
return ret;
}
internal static HandleRef getCPtr(Trigger obj)
{
return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr);
}
