public void test_UnitDefinition_parent_create() { Model m = new Model(2,4); UnitDefinition ud = m.createUnitDefinition(); ListOf lo = m.getListOfUnitDefinitions(); assertTrue( lo == m.getUnitDefinition(0).getParentSBMLObject() ); assertTrue( lo == ud.getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
/// <summary> /// [ UnitDefinitionStruct ] /// [[ Id , Name , [ UnitStruct ] ]] /// </summary> /// <param name="aSBMLmodel"></param> /// <returns></returns> public static List<UnitDefinitionStruct> getUnitDefinition(Model aSBMLmodel) { List<UnitDefinitionStruct> list = new List<UnitDefinitionStruct>(); ListOfUnitDefinitions listOfUnitDefinitions = aSBMLmodel.getListOfUnitDefinitions(); for (int i = 0; i < listOfUnitDefinitions.size(); i++ ) { UnitDefinition anUnitDefinition = aSBMLmodel.getUnitDefinition(i); string anId = anUnitDefinition.getId(); string aName = anUnitDefinition.getName(); List<UnitStruct> unitList = new List<UnitStruct>(); ListOfUnits listOfUnits = anUnitDefinition.getListOfUnits(); for (int j = 0; j < listOfUnits.size(); j++) { Unit anUnit = anUnitDefinition.getUnit(j); int anUnitKind = anUnit.getKind(); string aKind = libsbml.libsbml.UnitKind_toString( anUnitKind ); int anExponent = anUnit.getExponent(); int aScale = anUnit.getScale(); double aMultiplier = anUnit.getMultiplier(); double anOffset = anUnit.getOffset(); UnitStruct unit = new UnitStruct( aKind, anExponent, aScale, aMultiplier, anOffset ); unitList.Add( unit ); } UnitDefinitionStruct unitDefinition = new UnitDefinitionStruct( anId, aName, unitList ); list.Add(unitDefinition); } return list; }
public void test_UnitDefinition_parent_add() { UnitDefinition ia = new UnitDefinition(2,4); Model m = new Model(2,4); ia.setId("u"); ia.createUnit(); m.addUnitDefinition(ia); ia = null; ListOf lo = m.getListOfUnitDefinitions(); assertTrue( lo == m.getUnitDefinition(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_UnitDefinition_ancestor_create() { Model m = new Model(2,4); UnitDefinition ud = m.createUnitDefinition(); ListOf lo = m.getListOfUnitDefinitions(); assertTrue( ud.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( ud.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( ud.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( ud.getAncestorOfType(libsbml.SBML_EVENT) == null ); UnitDefinition obj = m.getUnitDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_UnitDefinition_ancestor_add() { UnitDefinition ia = new UnitDefinition(2,4); Model m = new Model(2,4); ia.setId("u"); ia.createUnit(); m.addUnitDefinition(ia); ia = null; ListOf lo = m.getListOfUnitDefinitions(); UnitDefinition obj = m.getUnitDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_ReadSBML_notes_ListOf() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" + " <notes>My Functions</notes>" + " <functionDefinition/>" + "</listOfFunctionDefinitions>" + "<listOfUnitDefinitions>" + " <notes>My Units</notes>" + " <unitDefinition/>" + "</listOfUnitDefinitions>" + "<listOfCompartments>" + " <notes>My Compartments</notes>" + " <compartment/>" + "</listOfCompartments>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getListOfFunctionDefinitions(); assertEquals( true, sb.isSetNotes() ); string notes = sb.getNotes().getChild(0).getCharacters(); assertTrue( ( "My Functions" != notes ) == false ); sb = M.getListOfUnitDefinitions(); assertEquals( true, sb.isSetNotes() ); notes = sb.getNotes().getChild(0).getCharacters(); assertTrue( ( "My Units" != notes ) == false ); sb = M.getListOfCompartments(); assertEquals( true, sb.isSetNotes() ); notes = sb.getNotes().getChild(0).getCharacters(); assertTrue( ( "My Compartments" != notes ) == false ); }
public void test_ReadSBML_metaid_ListOf() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions metaid='lofd'/>" + "<listOfUnitDefinitions metaid='loud'/>" + "<listOfCompartments metaid='loc'/>" + "<listOfSpecies metaid='los'/>" + "<listOfParameters metaid='lop'/>" + "<listOfRules metaid='lor'/>" + "<listOfReactions metaid='lorx'/>" + "<listOfEvents metaid='loe'/>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getListOfFunctionDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lofd" == sb.getMetaId() )); sb = M.getListOfUnitDefinitions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loud" == sb.getMetaId() )); sb = M.getListOfCompartments(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loc" == sb.getMetaId() )); sb = M.getListOfSpecies(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "los" == sb.getMetaId() )); sb = M.getListOfParameters(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lop" == sb.getMetaId() )); sb = M.getListOfRules(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lor" == sb.getMetaId() )); sb = M.getListOfReactions(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "lorx" == sb.getMetaId() )); sb = M.getListOfEvents(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loe" == sb.getMetaId() )); }