private void GroupFeatures() { if (currIndex < allRawFileNames.Count) { var currRawFileString = allRawFileNames[currIndex]; currRawFile = new ThermoRawFile(currRawFileString); currRawFile.Open(); var path = outputTextBox.Text + "\\" + currRawFile.Name + "_ExtractedFeatures.gcfeat"; conn = new SQLiteConnection(@"Data Source=" + path); conn.Open(); rawFileListBox.ClearSelected(); rawFileListBox.SelectedIndex = currIndex; if (!SQLiteIOMethods.IsGroupingDone(conn)) { currFDM = new FeatureDetectionMethods(currRawFile); statusLabel.Text = "Grouping Features from " + currRawFile.Name + "..."; currFDM.Finished += grouping_Finished; //currentThread = new Thread(() => currFDM.GroupFeatures(conn)); //currentThread.Start(); } else { currIndex++; double percent = ((double)currIndex) / ((double)allRawFileNames.Count) * 100; statusBar.Value = (int)percent; GroupFeatures(); } } else { currRawFile.ClearCachedScans(); currRawFile.Dispose(); if (conn != null) { conn.Close(); conn.Dispose(); } conn = null; if (currFDM != null) { currFDM.Dispose(); currFDM = null; } GC.Collect(); rawFileListBox.ClearSelected(); foreach (Control control in this.Controls) { control.Enabled = true; } statusBar.Value = 100; statusLabel.Text = "Done!"; } }
public void PrepDatabase(string rawFilePath, string outputDirectory) { var rawFile = new ThermoRawFile(rawFilePath); rawFile.Open(); var path = outputDirectory + "\\" + rawFile.Name + "_ExtractedFeatures.gcfeat"; var conn = new SQLiteConnection(@"Data Source=" + path); conn.Open(); SQLiteIOMethods.CreateTablesInDatabase(conn); SQLiteIOMethods.AddRawFileEntry(rawFile, conn); SQLiteIOMethods.AddRawFileTICChroma(rawFile, conn); SQLiteIOMethods.CreateIndices(conn); conn.Close(); conn.Dispose(); rawFile.ClearCachedScans(); rawFile.Dispose(); OnFinish(); }
private void extractFeatures() { if (currIndex < allRawFileNames.Count) { var currRawFileString = allRawFileNames[currIndex]; currRawFile = new ThermoRawFile(currRawFileString); currRawFile.Open(); var path = outputTextBox.Text + "\\" + currRawFile.Name + "_ExtractedFeatures.gcfeat"; conn = new SQLiteConnection(@"Data Source=" + path); conn.Open(); rawFileListBox.ClearSelected(); rawFileListBox.SelectedIndex = currIndex; this.Text = currIndex + "\\" + allRawFileNames.Count + " Deconvolved..."; if (!SQLiteIOMethods.IsExtractionDone(conn)) { currFDM = new FeatureDetectionMethods(currRawFile); statusLabel.Text = "Adding Features from " + currRawFile.Name + " to Database..."; currFDM.Progress += deconvolution_Progress; currFDM.Finished += deconvolution_Finished; currentThread = new Thread(() => currFDM.StepwiseSetupFinalGroups(currRawFile, conn)); currentThread.Start(); } else { conn.Close(); conn.Dispose(); currRawFile.Dispose(); currIndex++; extractFeatures(); } } else { currIndex = 0; //statusBar.Value = 0; //statusLabel.Text = "Starting Feature Grouping..."; //GroupFeatures(); currRawFile.ClearCachedScans(); currRawFile.Dispose(); if (conn != null) { conn.Close(); conn.Dispose(); } conn = null; if (currFDM != null) { currFDM.Dispose(); currFDM = null; } GC.Collect(); rawFileListBox.ClearSelected(); foreach (Control control in this.Controls) { control.Enabled = true; } statusBar.Value = 100; statusLabel.Text = "Done!"; this.Text = "Deconvolution Engine"; } }