private void GroupFeatures()
{
if (currIndex < allRawFileNames.Count)
{
var currRawFileString = allRawFileNames[currIndex];
currRawFile = new ThermoRawFile(currRawFileString);
currRawFile.Open();
var path = outputTextBox.Text + "\\" + currRawFile.Name + "_ExtractedFeatures.gcfeat";
conn = new SQLiteConnection(@"Data Source=" + path);
conn.Open();
rawFileListBox.ClearSelected();
rawFileListBox.SelectedIndex = currIndex;
if (!SQLiteIOMethods.IsGroupingDone(conn))
{
currFDM = new FeatureDetectionMethods(currRawFile);
statusLabel.Text = "Grouping Features from " + currRawFile.Name + "...";
currFDM.Finished += grouping_Finished;
//currentThread = new Thread(() => currFDM.GroupFeatures(conn));
//currentThread.Start();
}
else
{
currIndex++;
double percent = ((double)currIndex) / ((double)allRawFileNames.Count) * 100;
statusBar.Value = (int)percent;
GroupFeatures();
}
}
else
{
currRawFile.ClearCachedScans();
currRawFile.Dispose();
if (conn != null)
{
conn.Close();
conn.Dispose();
}
conn = null;
if (currFDM != null)
{
currFDM.Dispose();
currFDM = null;
}
GC.Collect();
rawFileListBox.ClearSelected();
foreach (Control control in this.Controls)
{
control.Enabled = true;
}
statusBar.Value = 100;
statusLabel.Text = "Done!";
}
}
public void PrepDatabase(string rawFilePath, string outputDirectory)
{
var rawFile = new ThermoRawFile(rawFilePath);
rawFile.Open();
var path = outputDirectory + "\\" + rawFile.Name + "_ExtractedFeatures.gcfeat";
var conn = new SQLiteConnection(@"Data Source=" + path);
conn.Open();
SQLiteIOMethods.CreateTablesInDatabase(conn);
SQLiteIOMethods.AddRawFileEntry(rawFile, conn);
SQLiteIOMethods.AddRawFileTICChroma(rawFile, conn);
SQLiteIOMethods.CreateIndices(conn);
conn.Close();
conn.Dispose();
rawFile.ClearCachedScans();
rawFile.Dispose();
OnFinish();
}
private void extractFeatures()
{
if (currIndex < allRawFileNames.Count)
{
var currRawFileString = allRawFileNames[currIndex];
currRawFile = new ThermoRawFile(currRawFileString);
currRawFile.Open();
var path = outputTextBox.Text + "\\" + currRawFile.Name + "_ExtractedFeatures.gcfeat";
conn = new SQLiteConnection(@"Data Source=" + path);
conn.Open();
rawFileListBox.ClearSelected();
rawFileListBox.SelectedIndex = currIndex;
this.Text = currIndex + "\\" + allRawFileNames.Count + " Deconvolved...";
if (!SQLiteIOMethods.IsExtractionDone(conn))
{
currFDM = new FeatureDetectionMethods(currRawFile);
statusLabel.Text = "Adding Features from " + currRawFile.Name + " to Database...";
currFDM.Progress += deconvolution_Progress;
currFDM.Finished += deconvolution_Finished;
currentThread = new Thread(() => currFDM.StepwiseSetupFinalGroups(currRawFile, conn));
currentThread.Start();
}
else
{
conn.Close();
conn.Dispose();
currRawFile.Dispose();
currIndex++;
extractFeatures();
}
}
else
{
currIndex = 0;
//statusBar.Value = 0;
//statusLabel.Text = "Starting Feature Grouping...";
//GroupFeatures();
currRawFile.ClearCachedScans();
currRawFile.Dispose();
if (conn != null)
{
conn.Close();
conn.Dispose();
}
conn = null;
if (currFDM != null)
{
currFDM.Dispose();
currFDM = null;
}
GC.Collect();
rawFileListBox.ClearSelected();
foreach (Control control in this.Controls)
{
control.Enabled = true;
}
statusBar.Value = 100;
statusLabel.Text = "Done!";
this.Text = "Deconvolution Engine";
}
}
