public void Test()
{
PseudoSequenceBuilder builder = new PseudoSequenceBuilder("KR", false);
Sequence seq = new Sequence("TEST", "EISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSK");
builder.Build(seq);
Assert.AreEqual("EISQVFEIALRKNLPVNFEVAERSGPPHMNKFVTVKSVGEFVGEGEGSKK", seq.SeqString);
}
public void Test()
{
PseudoSequenceBuilder builder = new PseudoSequenceBuilder("KR", false);
Sequence seq = new Sequence("TEST", "EISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSK");
builder.Build(seq);
Assert.AreEqual("EISQVFEIALRKNLPVNFEVAERSGPPHMNKFVTVKSVGEFVGEGEGSKK", seq.SeqString);
}
public ReversedDatabaseBuilder(bool combined, bool pseudoAminoacid, string aminoacids, bool forward, string contaminantFile)
{
this.combined = combined;
this.contaminantFile = contaminantFile;
this.pseudoAminoacid = pseudoAminoacid;
if (pseudoAminoacid)
{
builder = new PseudoSequenceBuilder(aminoacids, forward);
}
}