Exemplos de RCPA.Seq PseudoSequenceBuilder em C# (CSharp)

Exemplo n.º 1

Arquivo: TestPseudoSequenceBuilder.cs Projeto: shengqh/RCPA.Test

 public void Test()
 {
   PseudoSequenceBuilder builder = new PseudoSequenceBuilder("KR", false);
   Sequence seq = new Sequence("TEST", "EISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSK");
   builder.Build(seq);
   Assert.AreEqual("EISQVFEIALRKNLPVNFEVAERSGPPHMNKFVTVKSVGEFVGEGEGSKK", seq.SeqString);
 }

Exemplo n.º 2

        public void Test()
        {
            PseudoSequenceBuilder builder = new PseudoSequenceBuilder("KR", false);
            Sequence seq = new Sequence("TEST", "EISQVFEIALKRNLPVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSK");

            builder.Build(seq);
            Assert.AreEqual("EISQVFEIALRKNLPVNFEVAERSGPPHMNKFVTVKSVGEFVGEGEGSKK", seq.SeqString);
        }

Exemplo n.º 3

        public ReversedDatabaseBuilder(bool combined, bool pseudoAminoacid, string aminoacids, bool forward, string contaminantFile)
        {
            this.combined        = combined;
            this.contaminantFile = contaminantFile;

            this.pseudoAminoacid = pseudoAminoacid;
            if (pseudoAminoacid)
            {
                builder = new PseudoSequenceBuilder(aminoacids, forward);
            }
        }