public SilacQuantificationPeptideFileProcessor(SilacQuantificationOption option) { this.option = option; this.builder = new SilacQuantificationMultipleFileBuilder(option, null); this.resultFormat = new MascotPeptideTextFormat(); this.MinPeptideRegressionCorrelation = 0.5; }
public ExtendSilacQuantificationProteinFileProcessor(SilacQuantificationOption option, IIdentifiedResultTextFormat resultFormat, Dictionary <string, List <string> > datasets, Dictionary <string, List <string> > rawpairs) { this.option = option; this.resultFormat = resultFormat; this.builder = new SilacQuantificationMultipleFileBuilder(option, rawpairs); this.datasets = datasets; }
public SilacQuantificationMultipleFileBuilder(SilacQuantificationOption option, Dictionary <string, List <string> > rawpairs) { this.option = option; this.rawpairs = rawpairs; this.MinScanNumber = 3; }
public SilacQuantificationFileBuilder(SilacQuantificationOption option) { this.option = option; this._rawReader = new CacheRawFile(option.RawFormat.GetRawFile()); this._sciBuilder = new SilacCompoundInfoBuilder(option.SilacParamFile, true); }