public SilacQuantificationPeptideFileProcessor(SilacQuantificationOption option)
{
this.option = option;
this.builder = new SilacQuantificationMultipleFileBuilder(option, null);
this.resultFormat = new MascotPeptideTextFormat();
this.MinPeptideRegressionCorrelation = 0.5;
}
public ExtendSilacQuantificationProteinFileProcessor(SilacQuantificationOption option, IIdentifiedResultTextFormat resultFormat, Dictionary <string, List <string> > datasets, Dictionary <string, List <string> > rawpairs)
{
this.option = option;
this.resultFormat = resultFormat;
this.builder = new SilacQuantificationMultipleFileBuilder(option, rawpairs);
this.datasets = datasets;
}
public SilacQuantificationMultipleFileBuilder(SilacQuantificationOption option, Dictionary <string, List <string> > rawpairs)
{
this.option = option;
this.rawpairs = rawpairs;
this.MinScanNumber = 3;
}
public SilacQuantificationFileBuilder(SilacQuantificationOption option)
{
this.option = option;
this._rawReader = new CacheRawFile(option.RawFormat.GetRawFile());
this._sciBuilder = new SilacCompoundInfoBuilder(option.SilacParamFile, true);
}
