public MsSpectraViewModel(MSSpectra spectrum) { Peptides = new ObservableCollection<PeptideViewModel>(); spectrum.Peptides.ForEach(x => Peptides.Add(new PeptideViewModel(x))); var info = SingletonDataProviders.GetDatasetInformation(spectrum.GroupId); if (info != null) { Dataset = new DatasetInformationViewModel(info); } Spectrum = spectrum; SelectedSpectrumPlotModel = new MsMsSpectraViewModel(spectrum, ""); if (spectrum.ParentFeature != null) { var msFeature = spectrum.ParentFeature; var umc = msFeature.ParentFeature; if (umc != null) { var newList = new List<UMCLight> {umc}; var xic = new XicViewModel(newList, "xic") { Model = { IsLegendVisible = false, TitleFontSize = 0 } }; SelectedSpectrumXic = xic; } } }
public AnalysisDatasetSelectionViewModel(MultiAlignAnalysis analysis) { m_inputFileFilter = "Input Files (*.txt)| *.txt| All Files (*.*)|*.*"; m_featureFileFilter = DatasetFilterFactory.BuildFileFilters(InputFileType.Features); m_openFileDialog = new OpenFileDialog {Filter = m_inputFileFilter}; m_analysis = analysis; ShouldSearchSubDirectories = SearchOption.TopDirectoryOnly; // Create The Dataset View Model for Binding Datasets = new ObservableCollection<DatasetInformationViewModel>(); foreach (var information in analysis.MetaData.Datasets) { var info = new DatasetInformationViewModel(information); info.Selected += info_Selected; Datasets.Add(info); } // Route the events here... AddFolderCommand = new BaseCommand(AddFolderDelegate, BaseCommand.AlwaysPass); AddInputFileCommand = new BaseCommand(AddInputFileDelegate, BaseCommand.AlwaysPass); AddSingleFileCommand = new BaseCommand(AddSingleFileDelegate, BaseCommand.AlwaysPass); BrowseSingleFileCommand = new BaseCommand(BrowseSingleFile, BaseCommand.AlwaysPass); BrowseInputFileCommand = new BaseCommand(BrowseInput, BaseCommand.AlwaysPass); BrowseDataFolderCommand = new BrowseFolderCommand(x => { DataFolderPath = x; }); RemoveSelectedCommand = new BaseCommand(RemoveSelected, BaseCommand.AlwaysPass); SelectAllCommand = new BaseCommand(SelectAllDelegate, BaseCommand.AlwaysPass); SelectNoneCommand = new BaseCommand(SelectNoneDelegate, BaseCommand.AlwaysPass); SelectedDatasets = new ObservableCollection<DatasetInformationViewModel>(); }
public PeptideViewModel(Peptide peptide) { m_peptide = peptide; var info = SingletonDataProviders.GetDatasetInformation(peptide.GroupId); if (info != null) { m_dataset = new DatasetInformationViewModel(info); } MatchedProteins = new ObservableCollection<ProteinViewModel>(); LoadProteinData(peptide); }
public void UpdateDatasets() { Datasets.Clear(); foreach (var info in m_analysis.MetaData.Datasets) { var viewmodel = new DatasetInformationViewModel(info); Datasets.Add(viewmodel); } }
public void UpdateDatasets() { Datasets.Clear(); foreach (var info in Analysis.MetaData.Datasets) { var viewmodel = new DatasetInformationViewModel(info); viewmodel.RemovalRequested += (s, e) => { var vm = s as DatasetInformationViewModel; if (vm != null) { var result = MessageBox.Show( string.Format("Are you sure that you'd like to remove {0}", vm.Dataset.DatasetName), "Remove Dataset?", MessageBoxButton.YesNo); if (result == MessageBoxResult.Yes) { this.Datasets.Remove(vm); this.Analysis.MetaData.Datasets.Remove(vm.Dataset); } } }; Datasets.Add(viewmodel); } }
/// <summary> /// Implementation for <see cref="AddDatasetCommand" />. /// </summary> private void AddDatasetImpl() { var openFileDialog = new OpenFileDialog { Multiselect = true, DefaultExt = ".raw|.csv", Filter = @"Supported Files|*.raw;*.csv;|Raw Files (*.raw)|*.raw|CSV Files (*.csv)|*.csv;" }; var result = openFileDialog.ShowDialog(); if (result != null && result.Value) { var filePaths = openFileDialog.FileNames; var allFilesSelected = filePaths.Any(file => file.EndsWith(".raw")) && filePaths.Any(file => file.EndsWith("_isos.csv")) && filePaths.Any(file => file.EndsWith("_scans.csv")); if (!allFilesSelected) { var statusMessage = "MultiAlign Rogue requires at least a .raw file, an isos file, and a scans file."; ApplicationStatusMediator.SetStatus(statusMessage); MessageBox.Show(statusMessage); return; } var datasets = DatasetInformation.ConvertInputFilesIntoDatasets(this.GetInputFilesFromPath(filePaths)); foreach (var dataset in datasets) { var datasetInformationViewModel = new DatasetInformationViewModel(dataset); datasetInformationViewModel.RemovalRequested += (s, e) => this.Datasets.Remove(datasetInformationViewModel); this.Datasets.Add(datasetInformationViewModel); this.CreateCommand.RaiseCanExecuteChanged(); } } }