public MsSpectraViewModel(MSSpectra spectrum)
{
Peptides = new ObservableCollection<PeptideViewModel>();
spectrum.Peptides.ForEach(x => Peptides.Add(new PeptideViewModel(x)));
var info = SingletonDataProviders.GetDatasetInformation(spectrum.GroupId);
if (info != null)
{
Dataset = new DatasetInformationViewModel(info);
}
Spectrum = spectrum;
SelectedSpectrumPlotModel = new MsMsSpectraViewModel(spectrum, "");
if (spectrum.ParentFeature != null)
{
var msFeature = spectrum.ParentFeature;
var umc = msFeature.ParentFeature;
if (umc != null)
{
var newList = new List<UMCLight> {umc};
var xic = new XicViewModel(newList, "xic")
{
Model =
{
IsLegendVisible = false,
TitleFontSize = 0
}
};
SelectedSpectrumXic = xic;
}
}
}
public AnalysisDatasetSelectionViewModel(MultiAlignAnalysis analysis)
{
m_inputFileFilter = "Input Files (*.txt)| *.txt| All Files (*.*)|*.*";
m_featureFileFilter = DatasetFilterFactory.BuildFileFilters(InputFileType.Features);
m_openFileDialog = new OpenFileDialog {Filter = m_inputFileFilter};
m_analysis = analysis;
ShouldSearchSubDirectories = SearchOption.TopDirectoryOnly;
// Create The Dataset View Model for Binding
Datasets = new ObservableCollection<DatasetInformationViewModel>();
foreach (var information in analysis.MetaData.Datasets)
{
var info = new DatasetInformationViewModel(information);
info.Selected += info_Selected;
Datasets.Add(info);
}
// Route the events here...
AddFolderCommand = new BaseCommand(AddFolderDelegate, BaseCommand.AlwaysPass);
AddInputFileCommand = new BaseCommand(AddInputFileDelegate, BaseCommand.AlwaysPass);
AddSingleFileCommand = new BaseCommand(AddSingleFileDelegate, BaseCommand.AlwaysPass);
BrowseSingleFileCommand = new BaseCommand(BrowseSingleFile, BaseCommand.AlwaysPass);
BrowseInputFileCommand = new BaseCommand(BrowseInput, BaseCommand.AlwaysPass);
BrowseDataFolderCommand = new BrowseFolderCommand(x => { DataFolderPath = x; });
RemoveSelectedCommand = new BaseCommand(RemoveSelected, BaseCommand.AlwaysPass);
SelectAllCommand = new BaseCommand(SelectAllDelegate, BaseCommand.AlwaysPass);
SelectNoneCommand = new BaseCommand(SelectNoneDelegate, BaseCommand.AlwaysPass);
SelectedDatasets = new ObservableCollection<DatasetInformationViewModel>();
}
public PeptideViewModel(Peptide peptide)
{
m_peptide = peptide;
var info = SingletonDataProviders.GetDatasetInformation(peptide.GroupId);
if (info != null)
{
m_dataset = new DatasetInformationViewModel(info);
}
MatchedProteins = new ObservableCollection<ProteinViewModel>();
LoadProteinData(peptide);
}
public void UpdateDatasets()
{
Datasets.Clear();
foreach (var info in m_analysis.MetaData.Datasets)
{
var viewmodel = new DatasetInformationViewModel(info);
Datasets.Add(viewmodel);
}
}
public void UpdateDatasets()
{
Datasets.Clear();
foreach (var info in Analysis.MetaData.Datasets)
{
var viewmodel = new DatasetInformationViewModel(info);
viewmodel.RemovalRequested += (s, e) =>
{
var vm = s as DatasetInformationViewModel;
if (vm != null)
{
var result =
MessageBox.Show(
string.Format("Are you sure that you'd like to remove {0}", vm.Dataset.DatasetName),
"Remove Dataset?",
MessageBoxButton.YesNo);
if (result == MessageBoxResult.Yes)
{
this.Datasets.Remove(vm);
this.Analysis.MetaData.Datasets.Remove(vm.Dataset);
}
}
};
Datasets.Add(viewmodel);
}
}
/// <summary>
/// Implementation for <see cref="AddDatasetCommand" />.
/// </summary>
private void AddDatasetImpl()
{
var openFileDialog = new OpenFileDialog
{
Multiselect = true,
DefaultExt = ".raw|.csv",
Filter = @"Supported Files|*.raw;*.csv;|Raw Files (*.raw)|*.raw|CSV Files (*.csv)|*.csv;"
};
var result = openFileDialog.ShowDialog();
if (result != null && result.Value)
{
var filePaths = openFileDialog.FileNames;
var allFilesSelected = filePaths.Any(file => file.EndsWith(".raw")) &&
filePaths.Any(file => file.EndsWith("_isos.csv")) &&
filePaths.Any(file => file.EndsWith("_scans.csv"));
if (!allFilesSelected)
{
var statusMessage =
"MultiAlign Rogue requires at least a .raw file, an isos file, and a scans file.";
ApplicationStatusMediator.SetStatus(statusMessage);
MessageBox.Show(statusMessage);
return;
}
var datasets = DatasetInformation.ConvertInputFilesIntoDatasets(this.GetInputFilesFromPath(filePaths));
foreach (var dataset in datasets)
{
var datasetInformationViewModel = new DatasetInformationViewModel(dataset);
datasetInformationViewModel.RemovalRequested += (s, e) => this.Datasets.Remove(datasetInformationViewModel);
this.Datasets.Add(datasetInformationViewModel);
this.CreateCommand.RaiseCanExecuteChanged();
}
}
}
