private InvestigationSourceInfo Parse(InvestigationSourceInfo sourceInfo, IdentificationPrescanInfo prescanInfo)
{
//Read genotype results for the items and experiments present in both sources.
DataTable results;
switch (sourceInfo.SourceType)
{
case InvestigationSourceType.Session:
results = ParseFromSession(sourceInfo.Session,
sourceInfo.ItemTypes,
sourceInfo.GenotypeStatuses,
prescanInfo.Items,
prescanInfo.Experiments);
break;
case InvestigationSourceType.ReferenceSet:
results = ParseFromReferenceSet(sourceInfo.SourceName, prescanInfo.Items, prescanInfo.Experiments);
break;
case InvestigationSourceType.File:
results = ParseFromFile(sourceInfo.SourceName,
prescanInfo.Items,
prescanInfo.Experiments);
break;
default:
throw new Exception("Unknown comparison source type.");
}
sourceInfo.Load(results, MySettings.Mode);
return(sourceInfo);
}
public Comparison(InvestigationSourceInfo sourceInfo1, InvestigationSourceInfo sourceInfo2, ComparisonSettings settings, ComparisonPrescanInfo prescanInfo)
{
MySourceInfo1 = sourceInfo1;
MySourceInfo2 = sourceInfo2;
MySettings = settings;
MyPrescanInfo = prescanInfo;
}
public IdentificationReportGenerator(InvestigationSourceInfo sourceInfo, IdentificationSettings settings, string connectionString)
:
base(connectionString)
{
MySourceInfo = sourceInfo;
MySettings = settings;
}
private IdentificationPrescanInfo GetPrescanInfo(InvestigationSourceInfo sourceInfo)
{
//Get information about used items and experiments from one source.
CIStringCollection items, experiments;
//Get used items and experiments in source 1.
switch (sourceInfo.SourceType)
{
case InvestigationSourceType.Session:
ScanSession(sourceInfo.Session, out items, out experiments);
break;
case InvestigationSourceType.ReferenceSet:
ScanReferenceSet(sourceInfo.SourceName, out items, out experiments);
break;
case InvestigationSourceType.File:
ScanFile(sourceInfo.SourceName, out items, out experiments);
break;
default:
throw new Exception("Unknown comparison source type.");
}
return(new IdentificationPrescanInfo(items, experiments));
}
public Identification(InvestigationSourceInfo sourceInfo, IdentificationSettings settings, IdentificationPrescanInfo prescanInfo)
{
MySourceInfo = sourceInfo;
MySettings = settings;
MyPrescanInfo = prescanInfo;
MyResultList = new List <IdentificationResults>();
}
public ComparisonReportGenerator(InvestigationSourceInfo sourceInfo1, InvestigationSourceInfo sourceInfo2, ComparisonSettings settings, string connectionString)
:
base(connectionString)
{
MySourceInfo1 = sourceInfo1;
MySourceInfo2 = sourceInfo2;
MySettings = settings;
}
private ComparisonPrescanInfo GetPrescanInfo(InvestigationSourceInfo sourceInfo1, InvestigationSourceInfo sourceInfo2)
{
//Get information about used items and experiments from both sources.
CIStringCollection itemsSource1, experimentsSource1, itemsSource2, experimentsSource2;
//Get used items and experiments in source 1.
switch (sourceInfo1.SourceType)
{
case InvestigationSourceType.Session:
ScanSession(sourceInfo1.Session, out itemsSource1, out experimentsSource1);
break;
case InvestigationSourceType.ReferenceSet:
ScanReferenceSet(sourceInfo1.SourceName, out itemsSource1, out experimentsSource1);
break;
case InvestigationSourceType.File:
ScanFile(sourceInfo1.SourceName, out itemsSource1, out experimentsSource1);
break;
default:
throw new Exception("Unknown comparison source type.");
}
//Get used items and experiments in source 2.
switch (sourceInfo2.SourceType)
{
case InvestigationSourceType.Session:
ScanSession(sourceInfo2.Session, out itemsSource2, out experimentsSource2);
break;
case InvestigationSourceType.ReferenceSet:
ScanReferenceSet(sourceInfo2.SourceName, out itemsSource2, out experimentsSource2);
break;
case InvestigationSourceType.File:
ScanFile(sourceInfo2.SourceName, out itemsSource2, out experimentsSource2);
break;
default:
throw new Exception("Unknown comparison source type.");
}
return(new ComparisonPrescanInfo(itemsSource1, itemsSource2, experimentsSource1, experimentsSource2));
}
override public string GenerateReport()
{
IdentificationPrescanInfo prescanInfo;
Identification idf;
//Scan the sources for used items and experiments to avoid loading unnecessary results into memory.
OnStatusChange("Prescanning");
prescanInfo = GetPrescanInfo(MySourceInfo);
//Get the results and do internal checking using the information found by the pre-scan.
OnStatusChange("Loading results");
MySourceInfo = Parse(MySourceInfo, prescanInfo);
//Perform the actual identification.
OnStatusChange("Performing identification");
idf = new Identification(MySourceInfo, MySettings, prescanInfo);
idf.StatusChange += new Investigation.InvestigationStatusChangeHandler(Investigation_StatusChanged);
idf.Identify();
OnStatusChange("Preparing report");
return(idf.ToString());
}
override public string GenerateReport()
{
ComparisonPrescanInfo prescanInfo;
Comparison cmp;
//Scan the sources for used items and experiments to avoid loading unnecessary results into memory.
OnStatusChange("Prescanning");
prescanInfo = GetPrescanInfo(MySourceInfo1, MySourceInfo2);
//Get the results and do internal checking using the information found by the pre-scan.
OnStatusChange("Loading results from source 1");
MySourceInfo1 = Parse(MySourceInfo1, prescanInfo);
OnStatusChange("Loading results from source 2");
MySourceInfo2 = Parse(MySourceInfo2, prescanInfo);
//Perform the actual comparison.
OnStatusChange("Performing comparison");
cmp = new Comparison(MySourceInfo1, MySourceInfo2, MySettings, prescanInfo);
cmp.StatusChange += new Investigation.InvestigationStatusChangeHandler(Investigation_StatusChanged);
cmp.Compare();
OnStatusChange("Preparing report");
return(cmp.ToString());
}
