private InvestigationSourceInfo Parse(InvestigationSourceInfo sourceInfo, IdentificationPrescanInfo prescanInfo) { //Read genotype results for the items and experiments present in both sources. DataTable results; switch (sourceInfo.SourceType) { case InvestigationSourceType.Session: results = ParseFromSession(sourceInfo.Session, sourceInfo.ItemTypes, sourceInfo.GenotypeStatuses, prescanInfo.Items, prescanInfo.Experiments); break; case InvestigationSourceType.ReferenceSet: results = ParseFromReferenceSet(sourceInfo.SourceName, prescanInfo.Items, prescanInfo.Experiments); break; case InvestigationSourceType.File: results = ParseFromFile(sourceInfo.SourceName, prescanInfo.Items, prescanInfo.Experiments); break; default: throw new Exception("Unknown comparison source type."); } sourceInfo.Load(results, MySettings.Mode); return(sourceInfo); }
public Comparison(InvestigationSourceInfo sourceInfo1, InvestigationSourceInfo sourceInfo2, ComparisonSettings settings, ComparisonPrescanInfo prescanInfo) { MySourceInfo1 = sourceInfo1; MySourceInfo2 = sourceInfo2; MySettings = settings; MyPrescanInfo = prescanInfo; }
public IdentificationReportGenerator(InvestigationSourceInfo sourceInfo, IdentificationSettings settings, string connectionString) : base(connectionString) { MySourceInfo = sourceInfo; MySettings = settings; }
private IdentificationPrescanInfo GetPrescanInfo(InvestigationSourceInfo sourceInfo) { //Get information about used items and experiments from one source. CIStringCollection items, experiments; //Get used items and experiments in source 1. switch (sourceInfo.SourceType) { case InvestigationSourceType.Session: ScanSession(sourceInfo.Session, out items, out experiments); break; case InvestigationSourceType.ReferenceSet: ScanReferenceSet(sourceInfo.SourceName, out items, out experiments); break; case InvestigationSourceType.File: ScanFile(sourceInfo.SourceName, out items, out experiments); break; default: throw new Exception("Unknown comparison source type."); } return(new IdentificationPrescanInfo(items, experiments)); }
public Identification(InvestigationSourceInfo sourceInfo, IdentificationSettings settings, IdentificationPrescanInfo prescanInfo) { MySourceInfo = sourceInfo; MySettings = settings; MyPrescanInfo = prescanInfo; MyResultList = new List <IdentificationResults>(); }
public ComparisonReportGenerator(InvestigationSourceInfo sourceInfo1, InvestigationSourceInfo sourceInfo2, ComparisonSettings settings, string connectionString) : base(connectionString) { MySourceInfo1 = sourceInfo1; MySourceInfo2 = sourceInfo2; MySettings = settings; }
private ComparisonPrescanInfo GetPrescanInfo(InvestigationSourceInfo sourceInfo1, InvestigationSourceInfo sourceInfo2) { //Get information about used items and experiments from both sources. CIStringCollection itemsSource1, experimentsSource1, itemsSource2, experimentsSource2; //Get used items and experiments in source 1. switch (sourceInfo1.SourceType) { case InvestigationSourceType.Session: ScanSession(sourceInfo1.Session, out itemsSource1, out experimentsSource1); break; case InvestigationSourceType.ReferenceSet: ScanReferenceSet(sourceInfo1.SourceName, out itemsSource1, out experimentsSource1); break; case InvestigationSourceType.File: ScanFile(sourceInfo1.SourceName, out itemsSource1, out experimentsSource1); break; default: throw new Exception("Unknown comparison source type."); } //Get used items and experiments in source 2. switch (sourceInfo2.SourceType) { case InvestigationSourceType.Session: ScanSession(sourceInfo2.Session, out itemsSource2, out experimentsSource2); break; case InvestigationSourceType.ReferenceSet: ScanReferenceSet(sourceInfo2.SourceName, out itemsSource2, out experimentsSource2); break; case InvestigationSourceType.File: ScanFile(sourceInfo2.SourceName, out itemsSource2, out experimentsSource2); break; default: throw new Exception("Unknown comparison source type."); } return(new ComparisonPrescanInfo(itemsSource1, itemsSource2, experimentsSource1, experimentsSource2)); }
override public string GenerateReport() { IdentificationPrescanInfo prescanInfo; Identification idf; //Scan the sources for used items and experiments to avoid loading unnecessary results into memory. OnStatusChange("Prescanning"); prescanInfo = GetPrescanInfo(MySourceInfo); //Get the results and do internal checking using the information found by the pre-scan. OnStatusChange("Loading results"); MySourceInfo = Parse(MySourceInfo, prescanInfo); //Perform the actual identification. OnStatusChange("Performing identification"); idf = new Identification(MySourceInfo, MySettings, prescanInfo); idf.StatusChange += new Investigation.InvestigationStatusChangeHandler(Investigation_StatusChanged); idf.Identify(); OnStatusChange("Preparing report"); return(idf.ToString()); }
override public string GenerateReport() { ComparisonPrescanInfo prescanInfo; Comparison cmp; //Scan the sources for used items and experiments to avoid loading unnecessary results into memory. OnStatusChange("Prescanning"); prescanInfo = GetPrescanInfo(MySourceInfo1, MySourceInfo2); //Get the results and do internal checking using the information found by the pre-scan. OnStatusChange("Loading results from source 1"); MySourceInfo1 = Parse(MySourceInfo1, prescanInfo); OnStatusChange("Loading results from source 2"); MySourceInfo2 = Parse(MySourceInfo2, prescanInfo); //Perform the actual comparison. OnStatusChange("Performing comparison"); cmp = new Comparison(MySourceInfo1, MySourceInfo2, MySettings, prescanInfo); cmp.StatusChange += new Investigation.InvestigationStatusChangeHandler(Investigation_StatusChanged); cmp.Compare(); OnStatusChange("Preparing report"); return(cmp.ToString()); }